Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 0.0e+00 1201.0 630 100.0
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.6e-280 969.1 631 80.3
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 8.4e-266 920.2 634 78.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 7.6e-251 870.5 627 72.4
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 5.1e-247 857.8 628 71.2
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.9e-233 812.8 633 69.0
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.7e-230 801.2 637 67.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 7.4e-230 800.8 631 67.0
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.0e-226 790.4 631 65.1
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 6.5e-226 787.7 634 65.5
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.1e-224 782.7 526 80.2
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.7e-224 781.6 526 80.0
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 8.0e-224 780.8 627 64.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.9e-223 778.5 629 66.1
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 5.2e-223 778.1 626 64.4
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 2.6e-222 775.8 633 64.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 7.4e-222 774.2 635 65.2
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 9.7e-222 773.9 639 64.9
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.1e-220 768.8 631 63.7
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 4.5e-219 765.0 568 70.8
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 5.9e-219 764.6 628 64.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.9e-218 762.3 633 63.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.5e-217 759.2 626 63.7
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 3.0e-215 752.3 631 62.6
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 5.2e-215 751.5 662 62.2
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 8.8e-215 750.7 631 62.4
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.0e-214 749.6 636 62.1
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.4e-214 748.8 627 62.8
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.3e-213 746.9 631 63.1
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.1e-212 741.9 629 61.4
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.2e-211 740.3 629 61.5
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.6e-211 740.0 661 61.7
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.6e-211 740.0 636 61.8
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.7e-211 739.2 629 61.4
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.0e-210 737.3 638 61.8
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.3e-210 736.9 630 61.4
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.2e-210 736.1 631 60.9
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.2e-210 736.1 636 61.2
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 5.0e-210 734.9 622 61.9
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 9.4e-209 730.7 519 73.8
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 9.4e-209 730.7 633 60.5
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.2e-208 730.3 591 66.7
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.0e-207 725.7 628 60.2
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.2e-205 719.5 632 60.0
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 8.3e-205 717.6 632 61.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.4e-204 716.8 635 60.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 9.1e-204 714.1 625 61.3
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.7e-203 712.6 632 60.0
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-202 710.7 672 57.9
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.3e-202 709.5 633 61.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 9.5e-201 704.1 631 59.1
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 6.1e-200 701.4 624 61.1
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 8.0e-200 701.0 642 58.3
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-199 700.3 633 59.9
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.8e-199 699.9 625 60.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 4.0e-199 698.7 626 59.7
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 6.8e-199 698.0 624 60.1
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 6.8e-199 698.0 628 59.2
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.2e-198 697.2 635 59.1
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 2.6e-198 696.0 630 59.5
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 2.6e-198 696.0 630 59.5
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 4.4e-198 695.3 632 58.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 7.5e-198 694.5 570 65.3
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-197 693.7 628 58.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.3e-197 693.7 628 59.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.7e-197 693.3 633 59.1
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.9e-197 692.6 633 59.2
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 9.2e-196 687.6 628 58.6
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 1.6e-195 686.8 621 59.6
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.3e-194 682.9 615 59.2
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 5.0e-194 681.8 647 57.5
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 9.5e-193 677.6 596 60.4
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.0e-190 669.8 569 63.1
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.0e-190 669.8 662 56.0
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.4e-190 668.7 629 58.3
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.0e-186 655.2 633 57.3
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.5e-185 652.9 558 62.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 4.0e-183 645.6 625 55.8
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.5e-182 643.7 623 55.2
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 3.4e-182 642.5 634 54.4
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 4.4e-182 642.1 544 62.9
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.3e-178 629.8 552 61.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.5e-177 627.1 628 56.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-175 619.8 530 61.9
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 3.4e-174 615.9 571 59.0
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 3.4e-174 615.9 514 63.2
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.9e-170 602.4 626 52.2
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.2e-167 592.0 444 68.5
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.9e-165 586.3 655 50.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.2e-163 580.9 471 65.2
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.3e-162 576.6 628 52.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.9e-161 573.5 634 50.0
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 3.0e-154 549.7 630 49.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 6.2e-152 542.0 467 63.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.0e-146 524.6 610 50.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 7.4e-137 491.9 367 69.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 8.2e-136 488.4 638 47.2
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 3.8e-125 453.0 394 60.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 3.6e-123 446.4 589 46.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 3.1e-119 433.3 479 50.9
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.3e-98 364.0 622 40.0
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.8e-90 337.8 389 50.1
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.2e-90 336.3 633 33.6
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 1.3e-88 331.6 437 50.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.1e-87 328.6 652 33.4
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-80 304.7 510 40.2
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.7e-80 304.7 510 40.2
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.6e-75 288.1 616 31.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 4.0e-74 283.5 257 58.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 8.9e-74 282.3 511 35.8
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 8.1e-67 259.2 374 43.3
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 8.6e-53 212.6 250 48.4
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 7.3e-52 209.5 250 48.0
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.1e-51 206.1 177 58.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.1e-43 181.4 167 55.7
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.2e-41 175.6 164 56.1
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.8e-41 173.3 130 70.8
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 9.9e-41 172.6 404 28.0
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 6.4e-40 169.9 144 61.8
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.1e-39 169.1 233 44.2
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.1e-37 160.2 165 51.5
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.5e-36 157.9 223 43.9
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-35 155.6 171 47.4
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.5e-33 147.1 143 54.5
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-31 141.7 409 30.6
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 4.6e-30 137.1 137 54.7
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.7e-29 133.3 371 31.8
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.7e-29 133.3 324 30.2
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.4e-26 124.8 556 26.6
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.7e-20 103.6 60 83.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-19 102.4 123 43.9
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.6e-19 102.1 165 37.6
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 8.2e-19 99.8 92 56.5
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 6.9e-18 96.7 83 63.9
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.3e-16 92.4 76 61.8
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 7.2e-15 86.7 81 58.0
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 2.5e-12 78.2 77 48.1
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-11 75.9 72 56.9
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.6e-11 75.5 94 48.9
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 1.4e-10 72.4 112 36.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 3.1e-10 71.2 40 85.0
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.8e-08 64.3 50 68.0
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.5e-07 60.5 75 40.0
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 9.4e-07 59.7 43 60.5
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.2e-06 59.3 47 63.8
Actinidia13212 Actinidia chinensis HOM05D004744 ORTHO05D005655 6.1e-06 57.0 33 87.9


User provided reference genes

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