Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.2e-196 688.7 337 100.0
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.1e-195 686.4 337 99.4
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.8e-174 615.9 332 89.2
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.8e-167 592.0 336 83.3
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.1e-166 590.1 332 86.1
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.0e-164 581.3 328 83.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 6.5e-164 580.9 335 82.7
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 6.1e-162 574.3 335 82.4
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.8e-161 572.8 335 81.2
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.9e-161 571.6 335 81.8
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 5.7e-160 567.8 328 82.6
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 9.7e-160 567.0 335 81.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 2.4e-158 562.4 335 80.3
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.1e-158 562.0 335 81.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 4.1e-158 561.6 335 81.5
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 1.2e-157 560.1 335 80.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-157 559.3 331 80.7
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.0e-157 559.3 335 79.4
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.9e-157 557.8 335 79.4
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.7e-156 556.2 335 78.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.5e-156 554.3 335 78.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.1e-155 553.5 335 79.1
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.4e-155 553.1 335 80.0
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.4e-155 553.1 335 78.2
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 2.5e-155 552.4 335 79.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 7.2e-155 550.8 335 78.2
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.6e-154 548.5 335 78.5
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.0e-153 547.0 335 76.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.4e-153 546.6 335 76.7
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.4e-153 546.6 336 76.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.8e-153 546.2 333 78.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.1e-153 544.7 335 78.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.1e-153 544.7 335 78.2
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-152 543.5 335 79.7
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.1e-152 543.5 335 77.6
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.0e-152 542.7 335 76.4
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.5e-152 542.3 335 78.2
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.3e-152 542.0 328 77.4
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.3e-152 541.6 335 78.2
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 2.8e-151 538.9 335 76.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.8e-151 538.9 335 77.9
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 3.7e-151 538.5 335 75.5
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 8.2e-151 537.3 335 77.3
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.8e-150 536.2 337 76.3
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.4e-150 535.8 335 77.3
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 3.1e-150 535.4 333 76.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 5.3e-150 534.6 332 75.9
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.0e-149 532.7 332 79.5
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.6e-149 532.3 335 74.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.0e-148 530.4 335 75.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.0e-148 530.4 335 75.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.3e-148 530.0 330 76.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.8e-148 528.5 335 74.6
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 5.0e-148 528.1 335 73.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 5.0e-148 528.1 323 78.9
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 5.0e-148 528.1 333 76.3
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 8.5e-148 527.3 335 72.8
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 8.5e-148 527.3 333 76.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.1e-147 526.9 337 75.1
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.1e-147 526.9 335 74.9
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.9e-147 526.2 334 76.3
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.9e-147 526.2 330 75.8
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.9e-147 526.2 335 73.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.2e-147 524.2 334 75.7
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.6e-146 523.1 334 75.1
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.7e-146 522.3 334 75.1
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.6e-146 521.9 332 75.0
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 6.1e-146 521.2 335 73.4
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.0e-145 520.4 337 73.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.3e-145 519.2 325 76.3
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 3.9e-145 518.5 335 73.7
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 6.7e-145 517.7 335 72.8
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 8.8e-145 517.3 332 75.0
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 9.7e-144 513.8 332 73.8
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 4.8e-143 511.5 328 75.3
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 7.0e-142 507.7 336 72.9
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.5e-141 505.4 328 74.4
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.9e-141 504.6 332 73.2
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.9e-141 504.6 339 71.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.5e-140 501.1 332 71.1
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 6.5e-140 501.1 310 76.5
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-139 500.0 335 72.5
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.9e-139 499.6 339 71.4
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.9e-139 499.6 335 71.9
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-139 499.2 335 71.9
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-138 496.5 337 72.4
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 6.1e-138 494.6 330 72.4
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-137 492.7 343 70.8
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-136 490.3 335 72.8
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.0e-136 489.6 330 72.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.6e-136 489.2 329 72.6
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 9.7e-136 487.3 327 70.0
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.8e-135 485.7 335 71.9
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.1e-134 483.8 334 70.1
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.1e-134 483.8 328 70.1
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.2e-133 480.3 335 68.7
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.0e-132 477.2 333 70.3
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 1.0e-129 467.2 330 67.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 5.2e-129 464.9 335 68.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.6e-128 462.6 333 67.6
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.7e-127 459.9 261 87.4
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 4.8e-127 458.4 329 67.5
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 3.1e-126 455.7 323 71.2
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.5e-123 446.8 332 65.7
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 9.4e-123 444.1 311 69.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.2e-122 443.7 328 64.9
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 8.0e-122 441.0 332 64.5
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.8e-121 439.9 289 74.4
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.2e-120 437.2 328 64.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 3.4e-120 435.6 377 58.6
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.4e-120 435.6 328 64.6
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.4e-118 430.3 329 64.7
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 5.4e-118 428.3 327 63.9
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-117 427.2 289 69.6
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 5.0e-116 421.8 327 63.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.1e-115 420.6 313 65.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.9e-115 419.9 331 64.7
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.8e-114 416.0 332 63.3
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.5e-112 407.9 253 76.3
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.3e-95 354.0 342 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.3e-95 354.0 381 49.3
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 4.3e-91 339.0 215 78.6
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 8.9e-89 331.3 333 52.0
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.2e-88 330.9 345 52.8
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 7.6e-88 328.2 347 50.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 9.9e-88 327.8 277 60.3
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 6.4e-87 325.1 310 55.5
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.4e-87 324.7 209 76.1
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.4e-81 307.4 407 43.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 1.2e-80 304.3 250 62.4
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.2e-80 304.3 280 56.1
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 5.4e-78 295.4 187 72.7
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.5e-59 233.4 185 58.9
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 6.2e-58 228.8 184 60.3
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.3e-55 221.1 371 36.7
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 6.0e-53 212.2 153 65.4
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.0e-48 197.2 143 64.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 4.5e-48 196.1 333 39.0
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-47 194.1 157 63.1
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.4e-46 191.0 134 70.9
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-43 181.0 138 65.9
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-43 181.0 138 65.9
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.3e-43 179.9 248 41.9
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 1.0e-31 141.7 89 75.3
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.2e-31 140.6 109 66.1
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 2.5e-30 137.1 91 69.2
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 9.4e-30 135.2 152 49.3
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.0e-20 105.1 408 25.5
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.3e-19 100.1 67 68.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 7.0e-17 92.4 67 65.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.5e-14 84.7 76 52.6
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.6e-11 73.9 39 82.1
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-11 73.6 59 62.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.0e-08 64.3 66 47.0
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.5e-08 63.2 51 64.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.9e-06 57.8 32 78.1


User provided reference genes

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