Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.0e-135 484.2 244 100.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-112 409.1 235 88.5
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-104 382.5 204 92.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-104 382.5 204 92.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-83 312.4 215 78.1
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 4.6e-79 298.5 223 68.2
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.1e-79 298.1 153 96.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 5.7e-77 291.6 222 68.5
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 4.8e-76 288.5 223 66.8
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-75 287.3 226 66.8
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.0e-74 283.1 228 66.2
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.0e-74 283.1 242 62.8
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.7e-74 281.2 241 65.6
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.1e-72 277.3 231 63.2
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.2e-72 274.6 228 64.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.2e-72 274.6 220 64.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-71 273.9 220 64.5
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.1e-71 273.1 223 64.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.7e-71 272.7 225 64.0
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.6e-71 272.3 217 65.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.6e-71 272.3 217 65.4
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.9e-71 271.2 232 64.7
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.8e-70 270.0 232 61.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.0e-70 269.2 231 63.6
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 3.9e-70 268.9 256 56.2
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.9e-70 268.9 204 68.6
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 5.1e-70 268.5 228 63.2
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 8.8e-70 267.7 215 64.7
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.1e-69 267.3 217 63.6
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 9.7e-69 264.2 212 63.7
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.7e-68 263.5 231 61.5
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 3.7e-68 262.3 223 60.5
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.7e-68 262.3 223 60.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.1e-67 260.8 199 66.8
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.1e-67 260.8 228 63.6
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.4e-67 260.4 223 58.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.8e-67 260.0 219 62.1
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.4e-67 259.6 227 62.6
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 4.1e-67 258.8 223 60.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.2e-66 257.3 218 61.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-66 257.3 223 59.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.5e-66 256.9 223 58.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.6e-66 256.1 226 62.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.6e-66 256.1 236 58.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.6e-66 256.1 223 58.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 3.4e-66 255.8 232 59.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 7.7e-66 254.6 238 58.4
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.0e-65 254.2 227 59.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.0e-65 254.2 233 56.2
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.7e-65 253.4 231 59.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.7e-65 253.4 235 58.3
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.7e-65 253.4 224 60.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.2e-65 253.1 223 58.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.9e-65 252.7 227 61.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.9e-65 252.7 210 64.3
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.8e-65 252.3 223 58.7
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 6.5e-65 251.5 236 58.9
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 8.5e-65 251.1 228 58.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.1e-64 250.8 222 59.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.1e-64 250.8 222 58.6
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.2e-64 248.8 200 63.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 7.2e-64 248.1 226 61.1
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 9.4e-64 247.7 200 65.0
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.6e-63 246.9 232 56.9
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.1e-63 246.5 226 60.2
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.1e-63 246.5 206 60.7
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.7e-63 246.1 224 58.5
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 8.0e-63 244.6 210 61.4
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 8.0e-63 244.6 229 57.2
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.0e-62 244.2 232 57.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.0e-62 244.2 224 55.8
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.4e-62 243.8 226 60.2
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.4e-62 243.8 233 54.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.4e-62 243.8 243 56.4
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.3e-62 243.0 250 55.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 5.2e-62 241.9 234 56.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.0e-61 240.0 235 55.3
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.0e-61 240.0 235 55.3
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.6e-61 239.6 202 59.9
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.6e-61 239.6 225 55.6
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 5.7e-61 238.4 217 59.0
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 5.7e-61 238.4 217 59.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.4e-61 238.0 217 57.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 9.7e-61 237.7 226 54.4
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-60 236.9 199 61.3
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.7e-60 236.9 224 56.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.7e-60 235.7 199 59.3
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.7e-60 235.7 232 56.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.8e-60 235.3 225 54.2
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.1e-59 234.2 247 51.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.4e-59 233.0 202 57.9
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 9.1e-59 231.1 199 57.8
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.2e-58 230.7 227 52.9
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.5e-58 229.2 199 57.8
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.5e-58 229.2 223 55.2
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 5.9e-58 228.4 237 56.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 7.7e-58 228.0 237 56.5
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.9e-57 226.1 222 53.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 6.5e-57 224.9 234 53.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 8.5e-57 224.6 225 54.2
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.2e-54 215.3 217 52.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 5.7e-53 211.8 223 52.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.3e-52 210.7 154 66.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.7e-52 210.3 264 47.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.8e-52 209.5 214 56.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 3.1e-51 206.1 164 61.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.5e-48 196.4 153 61.4
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.7e-47 193.0 153 60.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.7e-47 192.2 171 59.6
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-41 174.5 168 56.0
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.7e-41 173.7 218 46.3
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 2.3e-41 173.3 203 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 5.5e-40 168.7 196 46.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.1e-39 166.8 196 48.0
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 6.3e-36 155.2 110 72.7
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.0e-34 150.2 196 44.9
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.3e-33 146.7 119 63.9
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.4e-29 132.9 160 47.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 2.9e-28 129.8 128 53.1
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 9.2e-27 124.8 140 47.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-23 114.4 99 55.6
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.0e-17 94.7 57 77.2
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.3e-12 75.1 88 48.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.1e-11 74.7 57 54.4
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 3.2e-11 73.2 79 45.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 9.2e-11 71.6 209 31.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-10 70.9 116 42.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.9e-09 66.2 173 28.3


User provided reference genes

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