Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007900 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 4.0e-45 184.5 100 100.0
Dinv34260 Davidia involucrata HOM05D001057 ORTHO05D003212 5.4e-26 120.9 95 75.8
Cfa003728 Carpinus fangiana HOM05D001057 ORTHO05D003212 2.1e-25 119.0 96 74.0
Atru.chr5.776 Acer truncatum HOM05D001057 ORTHO05D003212 4.6e-25 117.9 96 75.0
Haze_15741 Corylus avellana HOM05D001057 ORTHO05D003212 6.0e-25 117.5 96 74.0
Potri.014G106400 Populus trichocarpa HOM05D001057 ORTHO05D003212 1.0e-24 116.7 94 73.4
Sabra14G0078600 Salix brachista HOM05D001057 ORTHO05D003212 1.3e-24 116.3 94 71.3
GSVIVG01027447001 Vitis vinifera HOM05D001057 ORTHO05D003212 2.3e-24 115.5 96 77.1
Hma1.2p1_3000F.1_g331520 Hydrangea macrophylla HOM05D001057 ORTHO05D003212 3.0e-24 115.2 96 75.0
Duzib133G1558 Durio zibethinus HOM05D001057 ORTHO05D003212 6.6e-24 114.0 95 71.6
Hma1.2p1_0074F.1_g038805 Hydrangea macrophylla HOM05D001057 ORTHO05D003212 6.6e-24 114.0 93 76.3
Ciclev10022571m.g Citrus clementina HOM05D001057 ORTHO05D003212 2.5e-23 112.1 86 74.4
vmacro12636 Vaccinium macrocarpon HOM05D001057 ORTHO05D003212 7.3e-23 110.5 94 71.3
Oeu064416.2 Olea europaea HOM05D001057 ORTHO05D003212 9.6e-23 110.2 94 69.1
COL.COLO4_23055 Corchorus olitorius HOM05D001057 ORTHO05D003212 2.8e-22 108.6 96 69.8
Thecc.01G332500 Theobroma cacao HOM05D001057 ORTHO05D003212 3.6e-22 108.2 95 68.4
Prupe.2G198900 Prunus persica HOM05D001057 ORTHO05D003212 8.1e-22 107.1 90 72.2
Cpa.g.sc57.84 Carica papaya HOM05D001057 ORTHO05D003212 1.1e-21 106.7 87 67.8
QL08p047468 Quercus lobata HOM05D001057 ORTHO05D003212 1.1e-21 106.7 97 69.1
CiPaw.01G083600 Carya illinoinensis HOM05D001057 ORTHO05D003212 1.4e-21 106.3 96 68.8
Duzib138G0635 Durio zibethinus HOM05D001057 ORTHO05D003212 1.4e-21 106.3 100 68.0
MD07G1160900 Malus domestica HOM05D001057 ORTHO05D003212 1.8e-21 105.9 90 71.1
MD01G1089400 Malus domestica HOM05D001057 ORTHO05D003212 2.4e-21 105.5 90 72.2
Dinv32650 Davidia involucrata HOM05D001057 ORTHO05D003212 4.0e-21 104.8 98 69.4
Nn1g00455 Nelumbo nucifera HOM05D001057 ORTHO05D003212 4.0e-21 104.8 97 71.1
Potri.002G180400 Populus trichocarpa HOM05D001057 ORTHO05D003212 6.9e-21 104.0 94 66.0
Cc02_g39980 Coffea canephora HOM05D001057 ORTHO05D003212 1.2e-20 103.2 96 70.8
Rhsim01G0181300 Rhododendron simsii HOM05D001057 ORTHO05D003212 1.5e-20 102.8 95 68.4
Gohir.A11G101600 Gossypium hirsutum HOM05D001057 ORTHO05D003212 4.5e-20 101.3 101 63.4
Gohir.D11G106100 Gossypium hirsutum HOM05D001057 ORTHO05D003212 4.5e-20 101.3 101 63.4
Gorai.007G113600 Gossypium raimondii HOM05D001057 ORTHO05D003212 4.5e-20 101.3 101 63.4
Sabra02G0133800 Salix brachista HOM05D001057 ORTHO05D003212 4.5e-20 101.3 94 64.9
Glyma.07G049000 Glycine max HOM05D001057 ORTHO05D003212 5.8e-20 100.9 95 65.3
FvH4_7g17800 Fragaria vesca HOM05D001057 ORTHO05D003212 7.6e-20 100.5 96 65.6
FAN06G3193 Fragaria x ananassa HOM05D001057 ORTHO05D003212 7.6e-20 100.5 96 65.6
FAN06G4190 Fragaria x ananassa HOM05D001057 ORTHO05D003212 7.6e-20 100.5 96 65.6
Manes.05G015700 Manihot esculenta HOM05D001057 ORTHO05D003212 7.6e-20 100.5 101 62.4
FAN10G4363 Fragaria x ananassa HOM05D001057 ORTHO05D003212 9.9e-20 100.1 90 67.8
RcHm_v2.0_Chr1g0361201 Rosa chinensis HOM05D001057 ORTHO05D003212 9.9e-20 100.1 96 64.6
Actinidia28509 Actinidia chinensis HOM05D001057 ORTHO05D003212 1.3e-19 99.8 84 65.5
Manes.01G239100 Manihot esculenta HOM05D001057 ORTHO05D003212 1.3e-19 99.8 86 70.9
FAN10G1074 Fragaria x ananassa HOM05D001057 ORTHO05D003212 2.2e-19 99.0 90 66.7
THA.LOC104802098 Tarenaya hassleriana HOM05D001057 ORTHO05D003212 2.9e-19 98.6 94 62.8
FAN01G2307 Fragaria x ananassa HOM05D001057 ORTHO05D003212 3.8e-19 98.2 96 64.6
Actinidia28081 Actinidia chinensis HOM05D001057 ORTHO05D003212 4.9e-19 97.8 96 65.6
Lsat_1_v5_gn_7_115161 Lactuca sativa HOM05D001057 ORTHO05D003212 8.4e-19 97.1 82 65.9
arahy.Tifrunner.gnm1.ann1.5DA507 Arachis hypogaea HOM05D001057 ORTHO05D003212 1.1e-18 96.7 96 62.5
arahy.Tifrunner.gnm1.ann1.L2XBQ2 Arachis hypogaea HOM05D001057 ORTHO05D003212 1.1e-18 96.7 96 62.5
VMungo1309G2068 Vigna mungo HOM05D001057 ORTHO05D003212 1.9e-18 95.9 102 61.8
FAN03G1202 Fragaria x ananassa HOM05D001057 ORTHO05D003212 2.4e-18 95.5 90 66.7
THA.LOC104817403 Tarenaya hassleriana HOM05D001057 ORTHO05D003212 3.2e-18 95.1 96 60.4
Sed0016154 Sechium edule HOM05D001057 ORTHO05D003212 7.1e-18 94.0 98 60.2
TWI14G0688 Tripterygium wilfordii HOM05D001057 ORTHO05D003212 7.1e-18 94.0 96 63.5
Lj1g0018635 Lotus japonicus HOM05D001057 ORTHO05D003212 9.3e-18 93.6 102 58.8
Hund16756 Selenicereus undatus HOM05D001057 ORTHO05D003212 1.6e-17 92.8 96 59.4
TWI59G0709 Tripterygium wilfordii HOM05D001057 ORTHO05D003212 7.9e-17 90.5 101 58.4
Ca_09551_v3 Cicer arietinum L. HOM05D001057 ORTHO05D003212 1.3e-16 89.7 110 50.9
MBI04_g09597_MAGBIO Magnolia biondii HOM05D001057 ORTHO05D003212 1.3e-16 89.7 109 56.9
PSO782G3349 Papaver somniferum HOM05D001057 ORTHO05D003212 1.8e-16 89.4 98 60.2
Phvul.009G258500 Phaseolus vulgaris HOM05D001057 ORTHO05D003212 2.3e-16 89.0 102 59.8
TAR636G2945 Trochodendron aralioides HOM05D001057 ORTHO05D003212 2.3e-16 89.0 96 66.7
Thhalv10001663m.g Eutrema salsugineum HOM05D001057 ORTHO05D003212 3.0e-16 88.6 87 57.5
HanXRQChr06g0183421 Helianthus annuus HOM05D001057 ORTHO05D003212 3.0e-16 88.6 90 54.4
PSO063G4719 Papaver somniferum HOM05D001057 ORTHO05D003212 5.1e-16 87.8 98 59.2
Solyc10g005050.3 Solanum lycopersicum HOM05D001057 ORTHO05D003212 5.1e-16 87.8 102 59.8
Sopen10g001080 Solanum pennellii HOM05D001057 ORTHO05D003212 5.1e-16 87.8 102 59.8
MELO3C022303.2 Cucumis melo HOM05D001057 ORTHO05D003212 8.7e-16 87.0 99 60.6
CsaV3_6G008350 Cucumis sativus L. HOM05D001057 ORTHO05D003212 8.7e-16 87.0 99 59.6
PGSC0003DMG400011295 Solanum tuberosum HOM05D001057 ORTHO05D003212 1.9e-15 85.9 73 74.0
Glyma.16G017600 Glycine max HOM05D001057 ORTHO05D003212 2.5e-15 85.5 95 61.1
AL4G46290 Arabidopsis lyrata HOM05D001057 ORTHO05D003212 4.3e-15 84.7 94 59.6
Glyma.03G261500 Glycine max HOM05D001057 ORTHO05D003212 5.6e-15 84.3 93 55.9
Lalb_Chr04g0254131 Lupinus albus HOM05D001057 ORTHO05D003212 5.6e-15 84.3 90 58.9
Migut.B01923 Erythranthe guttata HOM05D001057 ORTHO05D003212 1.6e-14 82.8 96 57.3
HanXRQChr04g0119751 Helianthus annuus HOM05D001057 ORTHO05D003212 1.6e-14 82.8 91 57.1
Phvul.010G120100 Phaseolus vulgaris HOM05D001057 ORTHO05D003212 3.7e-14 81.6 95 58.9
Psat0s1908g0040 Pisum sativum HOM05D001057 ORTHO05D003212 3.7e-14 81.6 111 51.4
Carub.0004s2953 Capsella rubella HOM05D001057 ORTHO05D003212 6.2e-14 80.9 92 55.4
ClCG06G002300 Citrullus lanatus HOM05D001057 ORTHO05D003212 1.1e-13 80.1 99 56.6
MSTRG.17384 Avicennia marina HOM05D001057 ORTHO05D003212 1.4e-13 79.7 99 58.6
VMungo0331G1955 Vigna mungo HOM05D001057 ORTHO05D003212 3.1e-13 78.6 89 59.6
Aqoxy5G04348 Aquilegia oxysepala HOM05D001057 ORTHO05D003212 4.0e-13 78.2 92 54.3
DCAR_002975 Daucus carota HOM05D001057 ORTHO05D003212 5.3e-13 77.8 105 52.4
TAR629G0296 Trochodendron aralioides HOM05D001057 ORTHO05D003212 9.0e-13 77.0 117 50.4
BraA05t19098Z Brassica rapa HOM05D001057 ORTHO05D003212 3.4e-12 75.1 100 53.0
C04p01120 Brassica napus HOM05D001057 ORTHO05D003212 4.5e-12 74.7 100 53.0
BolC4t21765H Brassica oleracea HOM05D001057 ORTHO05D003212 4.5e-12 74.7 100 53.0
BcaNung03900 Brassica carinata HOM05D001057 ORTHO05D003212 7.6e-12 73.9 98 53.1
ECA236G4382 Erigeron canadensis HOM05D001057 ORTHO05D003212 1.0e-11 73.6 84 52.4
Sp4g28850 Schrenkiella parvula HOM05D001057 ORTHO05D003212 1.3e-11 73.2 88 53.4
Sc23g0001770 Simmondsia chinensis HOM05D001057 ORTHO05D003212 1.3e-11 73.2 95 49.5
Nitab4.5_0002053g0100 Nicotiana tabacum HOM05D001057 ORTHO05D003212 1.4e-10 69.7 105 51.4
AT2G46820 Arabidopsis thaliana HOM05D001057 ORTHO05D003212 1.9e-10 69.3 94 53.2
Glyma.19G260600 Glycine max HOM05D001057 ORTHO05D003212 1.9e-10 69.3 102 54.9
TPR.G4694 Trifolium pratense HOM05D001057 ORTHO05D003212 1.9e-10 69.3 76 56.6
A05p00980 Brassica napus HOM05D001057 ORTHO05D003212 3.2e-10 68.6 100 51.0
Lj3g0001792 Lotus japonicus HOM05D001057 ORTHO05D003212 3.5e-09 65.1 95 51.6
Aa31LG1G28190 Aethionema arabicum HOM05D001057 ORTHO05D003212 4.6e-09 64.7 97 48.5
Ah.05g178890 Amaranthus hybridus HOM05D001057 ORTHO05D003212 4.6e-09 64.7 101 47.5
arahy.Tifrunner.gnm1.ann1.L4UE4C Arachis hypogaea HOM05D001057 ORTHO05D003212 5.1e-08 61.2 104 49.0
arahy.Tifrunner.gnm1.ann1.KHD191 Arachis hypogaea HOM05D001057 ORTHO05D003212 6.7e-08 60.8 104 49.0
Medtr8g024180 Medicago truncatula HOM05D001057 ORTHO05D003212 3.3e-07 58.5 86 51.2
CARHR142160 Cardamine hirsuta HOM05D001057 ORTHO05D003212 4.3e-07 58.2 91 46.2
ATR0661G555 Amborella trichopoda HOM05D001057 ORTHO05D003212 7.4e-07 57.4 96 38.5
PGR042G1617 Punica granatum HOM05D001057 ORTHO05D003212 1.3e-06 56.6 139 41.7
Psat0s1479g0120 Pisum sativum HOM05D001057 ORTHO05D003212 2.8e-06 55.5 88 47.7
Medtr7g118290 Medicago truncatula HOM05D001057 ORTHO05D003212 3.7e-06 55.1 108 40.7
TPR.G29426 Trifolium pratense HOM05D001057 ORTHO05D003212 4.8e-06 54.7 91 44.0
BraA04t18923Z Brassica rapa HOM05D001057 ORTHO05D003212 6.2e-06 54.3 90 50.0


User provided reference genes

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