Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 3.3e-258 894.4 421 100.0
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.3e-230 802.7 420 89.3
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.1e-226 789.6 418 86.6
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.6e-226 788.5 421 86.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.8e-225 785.0 448 82.8
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 9.1e-224 780.0 448 82.4
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 1.2e-223 779.6 418 85.9
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.5e-223 779.2 419 85.4
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.9e-223 777.3 421 83.8
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 7.7e-223 776.9 418 86.4
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.7e-222 775.8 421 84.3
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 6.5e-222 773.9 419 85.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.1e-221 773.1 419 85.9
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.4e-221 772.7 421 84.3
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.9e-221 772.3 418 85.4
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 7.2e-221 770.4 419 84.7
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.2e-220 769.6 418 84.7
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.6e-220 769.2 417 85.6
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 7.9e-220 766.9 418 84.4
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.3e-219 765.4 419 85.4
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 5.2e-219 764.2 420 85.0
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.6e-218 761.9 419 84.0
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 3.3e-218 761.5 413 85.7
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.4e-218 761.1 419 83.5
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.3e-217 759.6 419 84.7
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.7e-217 759.2 419 84.0
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.2e-217 758.8 417 83.5
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 3.7e-217 758.1 400 87.2
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 3.7e-217 758.1 418 83.5
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.8e-216 755.7 418 82.8
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 2.4e-216 755.4 418 84.7
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.4e-216 755.4 419 82.8
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.3e-216 754.2 419 83.1
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 4.5e-215 751.1 417 81.8
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 1.0e-214 750.0 419 82.8
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.9e-213 745.7 459 76.9
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 3.2e-213 745.0 418 79.9
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 5.5e-213 744.2 424 83.5
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 7.2e-213 743.8 417 82.0
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 9.4e-213 743.4 417 81.8
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 1.6e-212 742.7 418 79.7
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 4.7e-212 741.1 421 80.5
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.1e-212 740.7 417 81.5
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 8.0e-212 740.3 422 81.3
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.4e-211 739.6 418 80.1
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 1.4e-211 739.6 404 86.4
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.0e-211 738.4 417 81.3
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 5.2e-211 737.6 421 79.8
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 1.2e-210 736.5 421 80.0
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.5e-210 736.1 419 81.4
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.0e-210 735.7 416 79.1
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 2.6e-210 735.3 422 81.3
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 3.3e-210 734.9 419 80.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 5.7e-210 734.2 419 80.4
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.5e-210 733.8 417 80.8
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.7e-209 732.6 417 80.8
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.2e-209 732.3 418 81.1
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.7e-209 731.5 419 80.0
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 1.4e-208 729.6 420 81.0
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-208 729.6 417 80.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 3.1e-208 728.4 418 80.1
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 5.3e-208 727.6 419 81.9
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.2e-207 726.5 420 79.8
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.6e-207 726.1 452 75.9
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 2.0e-207 725.7 416 78.6
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 2.7e-207 725.3 415 77.6
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.5e-207 724.5 397 85.4
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 4.5e-207 724.5 417 78.9
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 5.9e-207 724.2 417 79.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.9e-207 724.2 415 78.8
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.0e-206 723.4 417 79.9
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.0e-206 723.4 417 79.4
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.3e-206 723.0 416 79.3
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 1.3e-206 723.0 415 78.6
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 1.3e-206 723.0 416 79.6
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 6.5e-206 720.7 417 79.6
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 6.5e-206 720.7 416 77.2
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 8.5e-206 720.3 416 79.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.1e-205 719.9 416 77.4
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.5e-205 719.5 416 76.9
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 2.5e-205 718.8 416 78.8
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 9.4e-205 716.8 419 79.5
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.6e-204 716.1 416 79.1
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 2.1e-204 715.7 416 78.1
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 2.7e-204 715.3 420 79.3
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.7e-204 715.3 412 79.1
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 3.6e-204 714.9 416 78.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.0e-203 713.4 456 72.8
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 5.2e-203 711.1 416 77.9
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 4.4e-202 708.0 422 77.7
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.3e-201 706.4 422 78.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 1.7e-201 706.1 504 67.3
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 2.0e-199 699.1 429 77.2
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.0e-199 699.1 426 75.1
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.7e-199 698.7 425 75.1
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 3.8e-198 694.9 432 77.3
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 7.2e-197 690.6 402 78.6
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 1.6e-196 689.5 456 73.2
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.6e-196 688.3 402 78.4
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 2.3e-195 685.6 401 78.6
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 5.2e-195 684.5 401 78.3
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 2.6e-194 682.2 395 79.5
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.7e-193 679.5 420 72.4
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.1e-192 676.8 429 73.9
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 4.7e-188 661.4 418 70.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 8.0e-188 660.6 418 74.6
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.8e-187 659.4 404 75.2
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.7e-185 652.9 440 76.6
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 4.9e-185 651.4 417 74.8
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.8e-179 632.9 401 76.6
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 5.2e-171 604.7 421 69.8
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.5e-167 592.0 371 76.0
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 9.5e-165 583.9 417 66.2
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 3.6e-164 582.0 418 65.6
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 2.4e-163 579.3 416 63.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.3e-161 573.5 358 72.1
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 1.4e-160 570.1 300 86.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 3.3e-157 558.9 419 63.0
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.3e-157 558.5 421 66.7
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 5.3e-147 525.0 358 67.6
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 6.2e-140 501.5 269 85.5
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 1.1e-136 490.7 424 53.8
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.6e-132 476.9 469 55.2
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.2e-130 470.7 465 55.3
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 3.3e-125 452.6 468 49.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.2e-122 444.1 469 48.8
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 5.9e-114 415.2 422 50.5
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.8e-47 193.7 115 74.8
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.3e-31 141.7 93 68.8
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 2.4e-30 137.5 89 67.4
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 2.4e-30 137.5 89 67.4
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.9e-30 136.0 115 57.4
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 1.2e-29 135.2 82 79.3
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.7e-20 104.8 136 44.9
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 2.1e-18 97.8 66 66.7
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 2.7e-18 97.4 69 62.3
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 6.0e-18 96.3 66 66.7
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 3.0e-17 94.0 66 65.2
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.5e-16 91.7 55 74.5
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.8e-09 68.2 68 48.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.3e-09 67.8 204 25.5
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 7.4e-08 62.8 255 22.7
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 1.3e-07 62.0 47 63.8
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.1e-06 58.9 188 28.2
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.9e-06 56.2 170 25.9


User provided reference genes

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