Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 7.0e-107 390.6 190 100.0
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.1e-80 303.5 190 80.0
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 5.6e-80 301.2 189 79.4
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.6e-74 283.1 200 74.5
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 9.5e-72 273.9 187 78.1
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 9.9e-69 263.8 189 75.1
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 7.8e-66 254.2 189 68.8
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 5.1e-65 251.5 189 67.7
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 6.6e-65 251.1 189 68.3
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 8.6e-65 250.8 191 69.6
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.9e-64 249.6 198 67.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.9e-64 249.6 190 68.4
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 3.3e-64 248.8 189 67.2
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 5.6e-64 248.1 158 81.0
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 9.6e-64 247.3 190 68.4
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.4e-62 242.7 193 68.4
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 2.4e-62 242.7 193 68.9
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 5.2e-62 241.5 185 69.7
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 5.2e-62 241.5 193 68.9
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.5e-61 240.0 189 64.6
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.5e-61 240.0 192 66.1
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.4e-61 238.8 165 77.6
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 4.4e-61 238.4 186 68.8
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.3e-60 236.9 191 67.5
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 3.8e-60 235.3 174 71.8
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 4.9e-60 235.0 170 71.8
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.1e-59 233.8 200 65.5
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.4e-59 233.4 163 74.8
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 5.4e-59 231.5 171 70.8
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.6e-58 229.9 194 63.9
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 6.0e-58 228.0 190 66.8
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 7.8e-58 227.6 203 61.1
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 7.8e-58 227.6 202 61.4
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.8e-58 227.6 193 64.8
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 2.3e-57 226.1 211 58.3
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 3.0e-57 225.7 201 63.7
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 3.9e-57 225.3 189 64.0
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 6.6e-57 224.6 133 82.0
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 8.7e-57 224.2 190 65.3
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 1.5e-56 223.4 178 69.7
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.5e-56 222.6 199 61.3
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.3e-56 222.2 195 61.0
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 3.3e-56 222.2 191 63.4
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.3e-55 220.3 177 68.9
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 2.8e-55 219.2 177 68.4
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 3.6e-55 218.8 167 69.5
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.8e-55 218.4 193 64.2
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 6.2e-55 218.0 166 69.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 6.2e-55 218.0 142 77.5
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 6.2e-55 218.0 199 60.3
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 8.1e-55 217.6 163 69.3
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 6.9e-54 214.5 125 84.8
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 2.0e-53 213.0 198 61.1
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 3.4e-53 212.2 174 68.4
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 3.4e-53 212.2 147 75.5
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 5.8e-53 211.5 141 75.9
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 7.6e-53 211.1 168 66.1
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 9.9e-53 210.7 153 73.9
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.7e-52 209.9 190 64.7
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.9e-52 209.1 168 66.1
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 6.4e-52 208.0 153 72.5
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 6.4e-52 208.0 177 66.1
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 1.1e-51 207.2 169 65.7
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.4e-51 206.8 190 61.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.4e-51 206.1 177 65.5
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-51 206.1 190 61.6
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 7.1e-51 204.5 190 61.1
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 7.1e-51 204.5 190 61.1
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-50 203.8 190 61.1
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.6e-50 203.4 144 71.5
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.5e-50 202.2 192 59.4
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.5e-50 202.2 192 59.4
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 4.6e-50 201.8 166 69.9
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 6.0e-50 201.4 169 63.9
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 6.0e-50 201.4 189 60.3
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.0e-49 200.7 133 76.7
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 1.3e-49 200.3 172 64.0
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.0e-49 199.1 147 72.1
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 3.0e-49 199.1 145 72.4
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 5.1e-49 198.4 168 64.3
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 5.1e-49 198.4 137 76.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 5.1e-49 198.4 133 77.4
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 8.7e-49 197.6 167 64.1
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.9e-48 196.4 134 69.4
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.6e-47 193.4 173 63.0
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.6e-47 193.4 123 77.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.6e-47 192.2 123 79.7
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.8e-47 191.8 125 76.8
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 6.2e-47 191.4 136 74.3
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.1e-46 190.7 153 69.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.1e-46 190.7 123 78.9
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 1.4e-46 190.3 153 69.9
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 3.1e-46 189.1 129 72.9
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 1.2e-45 187.2 153 67.3
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 2.0e-45 186.4 123 72.4
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 3.4e-45 185.7 193 57.5
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 7.6e-45 184.5 135 71.9
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.3e-44 183.7 138 69.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.4e-44 181.4 119 77.3
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 3.2e-43 179.1 126 74.6
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 7.1e-43 177.9 193 56.5
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.6e-42 176.8 114 80.7
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 2.7e-42 176.0 150 65.3
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.0e-37 159.8 104 71.2
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 6.5e-36 154.8 115 69.6
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 4.2e-35 152.1 209 47.4
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 1.5e-32 143.7 116 68.1
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 9.6e-32 141.0 86 83.7
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.8e-30 136.7 110 69.1
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 4.1e-30 135.6 123 64.2
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 6.9e-30 134.8 120 62.5
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 9.0e-30 134.4 110 69.1
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.5e-29 133.7 77 85.7
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 3.4e-29 132.5 125 61.6
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.4e-29 132.5 79 86.1
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 1.9e-27 126.7 111 62.2
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 9.3e-27 124.4 109 65.1
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.6e-26 123.6 186 43.5
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.3e-24 115.9 62 88.7
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 3.1e-22 109.4 119 58.0
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.1e-22 109.4 67 80.6
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.4e-19 100.5 90 61.1
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.6e-18 95.9 121 49.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.0e-17 94.4 76 59.2
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.0e-17 94.4 64 70.3
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.8e-17 93.6 60 76.7
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.5e-16 89.7 112 43.8
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 6.3e-15 85.1 89 50.6
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.1e-10 70.1 79 50.6
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 6.7e-09 65.1 92 40.2
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 6.3e-07 58.5 85 42.4


User provided reference genes

Program Settings