Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007887 Camellia sinensis var. sinensis HOM05D006165 ORTHO05D007122 2.4e-41 171.8 88 100.0
RhsimUnG0021400 Rhododendron simsii HOM05D006165 ORTHO05D007122 3.2e-38 161.4 88 92.0
Actinidia22269 Actinidia chinensis HOM05D006165 ORTHO05D007122 5.4e-38 160.6 88 92.0
GSVIVG01033167001 Vitis vinifera HOM05D006165 ORTHO05D007122 1.6e-37 159.1 88 89.8
QL12p025620 Quercus lobata HOM05D006165 ORTHO05D007122 2.7e-37 158.3 87 89.7
vmacro07596 Vaccinium macrocarpon HOM05D006165 ORTHO05D007122 2.7e-37 158.3 88 90.9
Atru.chr7.2611 Acer truncatum HOM05D006165 ORTHO05D007122 6.0e-37 157.1 88 87.5
Nitab4.5_0001159g0150 Nicotiana tabacum HOM05D006165 ORTHO05D007122 6.0e-37 157.1 88 88.6
SalBow8G3105 Salvia bowleyana HOM05D006165 ORTHO05D007122 6.0e-37 157.1 88 89.8
SalBow8G4770 Salvia bowleyana HOM05D006165 ORTHO05D007122 6.0e-37 157.1 88 89.8
CiPaw.07G210800 Carya illinoinensis HOM05D006165 ORTHO05D007122 7.9e-37 156.8 88 88.6
Manes.03G005300 Manihot esculenta HOM05D006165 ORTHO05D007122 7.9e-37 156.8 88 88.6
Solyc12g096340.2 Solanum lycopersicum HOM05D006165 ORTHO05D007122 7.9e-37 156.8 88 88.6
Sopen12g032200 Solanum pennellii HOM05D006165 ORTHO05D007122 7.9e-37 156.8 88 88.6
Duzib168G2215 Durio zibethinus HOM05D006165 ORTHO05D007122 1.3e-36 156.0 88 88.6
Prupe.1G457700 Prunus persica HOM05D006165 ORTHO05D007122 1.8e-36 155.6 88 88.6
Thecc.09G009400 Theobroma cacao HOM05D006165 ORTHO05D007122 2.3e-36 155.2 88 87.5
Cc08_g06570 Coffea canephora HOM05D006165 ORTHO05D007122 3.0e-36 154.8 88 87.5
PGSC0003DMG400029372 Solanum tuberosum HOM05D006165 ORTHO05D007122 3.0e-36 154.8 88 87.5
CANSAT21G0300 Cannabis sativa HOM05D006165 ORTHO05D007122 3.9e-36 154.5 88 86.4
CAN.G947.12 Capsicum annuum HOM05D006165 ORTHO05D007122 5.1e-36 154.1 88 87.5
Migut.E01428 Erythranthe guttata HOM05D006165 ORTHO05D007122 5.1e-36 154.1 88 89.8
Peaxi162Scf00459g00842 Petunia axillaris HOM05D006165 ORTHO05D007122 5.1e-36 154.1 88 86.4
Cfa013294 Carpinus fangiana HOM05D006165 ORTHO05D007122 6.7e-36 153.7 88 87.5
Sabra18G0016200 Salix brachista HOM05D006165 ORTHO05D007122 8.7e-36 153.3 88 86.4
TPR.G12351 Trifolium pratense HOM05D006165 ORTHO05D007122 1.5e-35 152.5 88 86.4
Sp7g29430 Schrenkiella parvula HOM05D006165 ORTHO05D007122 1.9e-35 152.1 88 85.2
AL7G20440 Arabidopsis lyrata HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 85.2
AT4G31600 Arabidopsis thaliana HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 85.2
arahy.Tifrunner.gnm1.ann1.IM7VUN Arachis hypogaea HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 87.5
arahy.Tifrunner.gnm1.ann1.VQZ49N Arachis hypogaea HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 87.5
Carub.0007s0897 Capsella rubella HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 85.2
TWI63G0193 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 2.5e-35 151.8 88 84.1
CARHR239480 Cardamine hirsuta HOM05D006165 ORTHO05D007122 3.3e-35 151.4 87 85.1
Ca_15645_v3 Cicer arietinum L. HOM05D006165 ORTHO05D007122 3.3e-35 151.4 88 86.4
Medtr3g109070 Medicago truncatula HOM05D006165 ORTHO05D007122 3.3e-35 151.4 88 85.2
Aqoxy7G03190 Aquilegia oxysepala HOM05D006165 ORTHO05D007122 4.3e-35 151.0 88 85.2
MSTRG.1617 Avicennia marina HOM05D006165 ORTHO05D007122 5.6e-35 150.6 88 85.2
Thhalv10025721m.g Eutrema salsugineum HOM05D006165 ORTHO05D007122 5.6e-35 150.6 88 84.1
Lj8A479G58 Lonicera japonica HOM05D006165 ORTHO05D007122 5.6e-35 150.6 88 84.1
MD15G1105900 Malus domestica HOM05D006165 ORTHO05D007122 5.6e-35 150.6 88 85.2
Aa31LG2G18680 Aethionema arabicum HOM05D006165 ORTHO05D007122 7.4e-35 150.2 88 84.1
COL.COLO4_19013 Corchorus olitorius HOM05D006165 ORTHO05D007122 7.4e-35 150.2 88 86.4
Potri.018G009400 Populus trichocarpa HOM05D006165 ORTHO05D007122 1.3e-34 149.4 88 85.2
PGR044G1574 Punica granatum HOM05D006165 ORTHO05D007122 1.3e-34 149.4 88 85.2
Haze_21771 Corylus avellana HOM05D006165 ORTHO05D007122 1.6e-34 149.1 88 84.1
Lj8C450G4 Lonicera japonica HOM05D006165 ORTHO05D007122 1.6e-34 149.1 88 83.0
Sabra06G0210400 Salix brachista HOM05D006165 ORTHO05D007122 1.6e-34 149.1 88 85.2
BcaB03g12708 Brassica carinata HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
BcaC01g01078 Brassica carinata HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
A08p18550 Brassica napus HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
C03p87780 Brassica napus HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
BolC3t21091H Brassica oleracea HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
BraA08t33817Z Brassica rapa HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 83.0
Psat5g023880 Pisum sativum HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 84.1
THA.LOC104803627 Tarenaya hassleriana HOM05D006165 ORTHO05D007122 2.1e-34 148.7 88 84.1
MBI14_g30706_MAGBIO Magnolia biondii HOM05D006165 ORTHO05D007122 3.7e-34 147.9 88 84.1
ClCG08G012590 Citrullus lanatus HOM05D006165 ORTHO05D007122 4.8e-34 147.5 80 91.2
Eucgr.C04017 Eucalyptus grandis HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 84.1
Gohir.D07G038400 Gossypium hirsutum HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 83.0
Gorai.001G040400 Gossypium raimondii HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 83.0
Oeu008771.1 Olea europaea HOM05D006165 ORTHO05D007122 4.8e-34 147.5 89 82.0
RcHm_v2.0_Chr6g0305211 Rosa chinensis HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 84.1
VMungo1309G2577 Vigna mungo HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 85.2
TWI32G0478 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 6.2e-34 147.1 88 80.7
TAR383G0135 Trochodendron aralioides HOM05D006165 ORTHO05D007122 6.2e-34 147.1 88 84.1
ATR0580G193 Amborella trichopoda HOM05D006165 ORTHO05D007122 8.1e-34 146.7 88 83.0
PSO782G2746 Papaver somniferum HOM05D006165 ORTHO05D007122 8.1e-34 146.7 88 83.0
Nn2g12600 Nelumbo nucifera HOM05D006165 ORTHO05D007122 1.1e-33 146.4 85 84.7
AUR62037706 Chenopodium quinoa HOM05D006165 ORTHO05D007122 1.4e-33 146.0 88 81.8
Glyma.06G077800 Glycine max HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 83.0
Lalb_Chr23g0269201 Lupinus albus HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 83.0
Sc07g0007350 Simmondsia chinensis HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 84.1
Lj1g0019857 Lotus japonicus HOM05D006165 ORTHO05D007122 2.4e-33 145.2 86 83.7
Nitab4.5_0003963g0030 Nicotiana tabacum HOM05D006165 ORTHO05D007122 2.4e-33 145.2 88 84.1
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.1e-33 144.8 88 81.8
Phvul.009G102300 Phaseolus vulgaris HOM05D006165 ORTHO05D007122 3.1e-33 144.8 88 83.0
DCAR_000684 Daucus carota HOM05D006165 ORTHO05D007122 4.0e-33 144.4 88 83.0
EL10Ac2g02421 Beta vulgaris HOM05D006165 ORTHO05D007122 5.3e-33 144.1 88 83.0
FvH4_2g36601 Fragaria vesca HOM05D006165 ORTHO05D007122 5.3e-33 144.1 88 81.8
AUR62020293 Chenopodium quinoa HOM05D006165 ORTHO05D007122 6.9e-33 143.7 88 80.7
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.9e-33 143.7 88 80.7
Sed0016029 Sechium edule HOM05D006165 ORTHO05D007122 6.9e-33 143.7 80 87.5
Hma1.2p1_0102F.1_g049850 Hydrangea macrophylla HOM05D006165 ORTHO05D007122 9.0e-33 143.3 85 85.9
MD08G1126100 Malus domestica HOM05D006165 ORTHO05D007122 9.0e-33 143.3 88 80.7
CiPaw.08G021000 Carya illinoinensis HOM05D006165 ORTHO05D007122 1.2e-32 142.9 89 82.0
Gohir.A07G034748 Gossypium hirsutum HOM05D006165 ORTHO05D007122 1.5e-32 142.5 88 80.7
Zm00001eb391110 Zea mays HOM05D006165 ORTHO05D007122 2.6e-32 141.7 85 83.5
Zm00001eb422880 Zea mays HOM05D006165 ORTHO05D007122 2.6e-32 141.7 85 83.5
CsaV3_2G031310 Cucumis sativus L. HOM05D006165 ORTHO05D007122 3.4e-32 141.4 80 87.5
Ciclev10008929m.g Citrus clementina HOM05D006165 ORTHO05D007122 7.6e-32 140.2 88 83.0
Cpa.g.sc23.39 Carica papaya HOM05D006165 ORTHO05D007122 9.9e-32 139.8 87 79.3
CDE05G0069 Ceratophyllum demersum HOM05D006165 ORTHO05D007122 1.3e-31 139.4 85 83.5
Os06g0188100 Oryza sativa ssp. japonica HOM05D006165 ORTHO05D007122 1.3e-31 139.4 85 81.2
Hund02966 Selenicereus undatus HOM05D006165 ORTHO05D007122 1.3e-31 139.4 88 80.7
Ah.10g024890 Amaranthus hybridus HOM05D006165 ORTHO05D007122 6.4e-31 137.1 88 79.5
unitig_0.g2188 Utricularia gibba HOM05D006165 ORTHO05D007122 1.4e-30 136.0 88 79.5
HPP92_015853 Vanilla planifolia HOM05D006165 ORTHO05D007122 4.2e-30 134.4 87 78.2
SEGI_12356 Sequoiadendron giganteum HOM05D006165 ORTHO05D007122 2.1e-29 132.1 81 81.5
SMO351G0409 Selaginella moellendorffii HOM05D006165 ORTHO05D007122 1.0e-28 129.8 81 80.2
HanXRQChr03g0081901 Helianthus annuus HOM05D006165 ORTHO05D007122 1.9e-27 125.6 79 82.3
HanXRQChr17g0547151 Helianthus annuus HOM05D006165 ORTHO05D007122 1.9e-27 125.6 79 82.3
Lsat_1_v5_gn_5_46160 Lactuca sativa HOM05D006165 ORTHO05D007122 1.9e-27 125.6 74 83.8
Nn8g40282 Nelumbo nucifera HOM05D006165 ORTHO05D007122 1.9e-27 125.6 78 80.8
ECA240G4065 Erigeron canadensis HOM05D006165 ORTHO05D007122 4.3e-27 124.4 71 87.3
Sed0025542 Sechium edule HOM05D006165 ORTHO05D007122 2.1e-26 122.1 81 80.2
Dinv04088 Davidia involucrata HOM05D006165 ORTHO05D007122 8.2e-26 120.2 64 96.9
Mapoly0009s0233 Marchantia polymorpha HOM05D006165 ORTHO05D007122 1.8e-25 119.0 87 71.3
AagrBONN_evm.TU.Sc2ySwM_344.2498 Anthoceros agrestis HOM05D006165 ORTHO05D007122 1.1e-22 109.8 82 69.5
Mapoly0006s0268 Marchantia polymorpha HOM05D006165 ORTHO05D007122 1.2e-21 106.3 83 63.9
Zm00001eb163870 Zea mays HOM05D006165 ORTHO05D007122 4.6e-21 104.4 62 88.7
Cre17.g703250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 2.4e-17 92.0 76 59.2
CBR_g4355 Chara braunii HOM05D006165 ORTHO05D007122 5.3e-17 90.9 74 63.5
Glyma.04G076600 Glycine max HOM05D006165 ORTHO05D007122 5.0e-15 84.3 55 70.9
MCO11G920 Micromonas commoda HOM05D006165 ORTHO05D007122 8.5e-15 83.6 74 59.5
Cre16.g666250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 5.5e-14 80.9 64 62.5
Pp3c11_23500 Physcomitrium patens HOM05D006165 ORTHO05D007122 9.4e-14 80.1 76 52.6
Pp3c25_13780 Physcomitrium patens HOM05D006165 ORTHO05D007122 3.6e-13 78.2 74 51.4
PRCOL_00004919 Prasinoderma coloniale HOM05D006165 ORTHO05D007122 1.8e-12 75.9 70 55.7
Pp3c7_2020 Physcomitrium patens HOM05D006165 ORTHO05D007122 5.1e-12 74.3 72 52.8
CBR_g60598 Chara braunii HOM05D002754 ORTHO05D003271 4.8e-10 67.8 70 50.0
PRCOL_00006715 Prasinoderma coloniale HOM05D002754 ORTHO05D003271 4.5e-08 61.2 71 40.8
A01p06660 Brassica napus HOM05D000340 ORTHO05D000821 5.9e-08 60.8 54 66.7
CBR_g12209 Chara braunii HOM05D006165 ORTHO05D007122 2.2e-07 58.9 82 39.0
HPP92_015840 Vanilla planifolia HOM05D006165 ORTHO05D007122 2.2e-07 58.9 43 79.1
MSTRG.11612 Avicennia marina HOM05D002754 ORTHO05D003271 3.8e-07 58.2 67 47.8
C01p07420 Brassica napus HOM05D000340 ORTHO05D000821 3.8e-07 58.2 32 93.8
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 1.4e-06 56.2 40 77.5
BolC1t00724H Brassica oleracea HOM05D000340 ORTHO05D000821 1.9e-06 55.8 32 90.6
MELO3C031342.2 Cucumis melo HOM05D002754 ORTHO05D003271 3.2e-06 55.1 67 46.3
BraA01t00624Z Brassica rapa HOM05D000340 ORTHO05D000821 5.5e-06 54.3 46 67.4
THA.LOC104803651 Tarenaya hassleriana HOM05D002754 ORTHO05D003271 5.5e-06 54.3 71 43.7
CsaV3_2G003100 Cucumis sativus L. HOM05D002754 ORTHO05D003271 9.4e-06 53.5 67 46.3


User provided reference genes

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