Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.6e-244 847.8 428 100.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.1e-211 738.4 428 86.4
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.3e-209 733.0 428 86.2
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 8.7e-206 720.3 430 84.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.6e-204 714.9 439 83.6
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.3e-203 711.1 428 82.2
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.3e-201 706.4 428 82.5
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 3.5e-199 698.4 428 81.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 6.0e-199 697.6 433 82.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.8e-198 696.0 431 80.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.9e-197 692.6 428 80.6
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 5.6e-197 691.0 429 80.9
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 7.4e-197 690.6 432 80.3
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 7.4e-197 690.6 431 78.9
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 8.1e-196 687.2 432 79.9
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.8e-195 686.0 400 84.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.1e-195 685.3 431 79.4
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.1e-192 676.8 427 79.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.1e-192 676.8 411 81.8
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.6e-191 672.9 433 78.5
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 2.1e-191 672.5 415 81.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.0e-190 670.2 429 79.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.9e-190 668.3 406 80.3
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 8.7e-190 667.2 426 78.4
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.7e-190 667.2 426 78.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.5e-189 666.4 428 77.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 7.4e-189 664.1 431 76.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 9.6e-189 663.7 426 77.5
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.8e-188 662.1 400 80.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.8e-188 662.1 426 77.2
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.7e-188 661.8 398 81.7
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.7e-188 661.8 425 77.2
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.2e-188 660.6 416 78.1
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.8e-187 659.4 414 77.8
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.4e-187 659.1 426 77.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.2e-186 656.8 574 63.2
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 4.5e-186 654.8 414 77.3
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-185 653.7 430 77.2
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.7e-185 652.9 414 78.3
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.8e-185 651.7 413 78.7
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 4.9e-185 651.4 409 78.7
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.9e-185 651.4 427 75.9
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 4.9e-185 651.4 414 77.1
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 8.4e-185 650.6 434 75.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.2e-184 648.7 401 79.3
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 4.2e-184 648.3 399 79.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 9.3e-184 647.1 409 77.3
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 9.3e-184 647.1 416 77.4
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.7e-183 645.6 430 74.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 4.6e-183 644.8 406 77.6
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.3e-182 643.3 414 75.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.3e-182 643.3 428 74.5
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.8e-182 642.9 466 71.7
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.8e-182 642.9 468 70.7
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 3.9e-182 641.7 432 74.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 8.7e-182 640.6 432 73.8
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.3e-181 638.3 432 73.1
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 9.7e-181 637.1 428 73.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.6e-180 636.3 414 75.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 6.3e-180 634.4 433 72.3
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 6.3e-180 634.4 411 74.9
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.4e-179 633.3 433 74.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-179 632.9 433 72.1
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 5.3e-179 631.3 406 75.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.5e-178 629.8 395 80.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.0e-178 629.4 417 75.1
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.5e-178 628.2 392 77.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 4.5e-178 628.2 398 77.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.7e-177 626.3 433 73.9
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.0e-177 624.8 411 75.7
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.0e-177 624.8 436 72.2
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.9e-176 622.9 392 76.8
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 5.5e-176 621.3 412 73.1
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.6e-175 619.8 433 71.6
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.1e-175 619.4 433 71.6
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 8.8e-174 614.0 433 71.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 8.8e-174 614.0 433 71.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 8.8e-174 614.0 405 75.6
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 6.9e-171 604.4 356 83.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.8e-169 598.6 416 72.4
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.2e-168 594.3 432 70.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 2.1e-167 592.8 409 71.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-166 590.5 425 68.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.3e-166 589.3 410 69.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.7e-164 583.2 466 66.5
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.7e-164 582.0 350 80.6
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.8e-163 579.7 387 71.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 9.1e-163 577.4 370 77.6
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.2e-162 577.0 414 68.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 5.0e-161 571.6 374 75.7
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.5e-157 560.1 331 82.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.7e-156 556.6 391 72.1
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.0e-153 547.4 407 70.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 5.5e-152 541.6 409 68.2
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.7e-148 530.0 399 68.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 8.2e-148 527.7 344 72.7
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.8e-147 526.6 327 80.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.6e-146 523.5 329 75.1
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.1e-143 513.1 396 60.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.7e-143 512.7 419 60.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.3e-142 509.6 381 64.6
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 6.8e-142 508.1 378 65.1
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 7.2e-136 488.0 411 63.3
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 3.1e-131 472.6 332 69.6
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 4.3e-128 462.2 351 69.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.9e-126 454.5 326 71.2
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 5.2e-118 428.7 377 55.4
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 9.2e-115 417.9 266 78.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.3e-112 409.1 298 68.8
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.2e-111 407.5 277 72.2
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.3e-104 382.5 349 59.3
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 4.0e-102 375.9 320 58.4
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 7.6e-101 371.7 410 47.8
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.3e-97 360.1 227 76.7
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 6.2e-95 352.1 386 47.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 2.6e-93 346.7 399 46.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 8.4e-68 261.9 170 72.4
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 7.1e-67 258.8 253 57.7
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.1e-67 258.8 264 51.5
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-60 238.4 172 70.3
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.3e-60 238.0 122 97.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.3e-57 227.3 130 83.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 8.2e-55 218.8 187 62.6
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.0e-52 211.8 339 36.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-46 188.7 167 56.3
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.6e-37 161.4 142 61.3
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.2e-31 141.0 104 72.1
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.2e-31 141.0 108 66.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.5e-29 133.3 416 29.6
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 4.2e-27 126.7 85 70.6
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.7e-26 124.0 97 66.0
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 6.6e-20 102.8 64 68.8
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.4e-14 84.3 99 45.5
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.0e-12 79.0 49 71.4
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.3e-12 77.8 84 51.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.2e-10 72.0 62 56.5
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.2e-10 72.0 63 55.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.0e-09 68.9 43 76.7
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 1.4e-06 58.5 42 61.9
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.9e-06 58.2 62 50.0
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.1e-06 57.0 68 52.9


User provided reference genes

Program Settings