Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007855 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 1.3e-31 139.0 68 100.0
CSS0000361 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 1.3e-23 112.5 57 96.5
CSS0050332 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 1.9e-22 108.6 71 81.7
CSS0000418 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D001007 2.0e-19 98.6 55 89.1
Rhsim05G0116300 Rhododendron simsii HOM05D000421 ORTHO05D001007 1.1e-14 82.8 55 72.7
vmacro19837 Vaccinium macrocarpon HOM05D000421 ORTHO05D001007 6.8e-12 73.6 46 76.1
Dinv29669 Davidia involucrata HOM05D000421 ORTHO05D012543 1.5e-11 72.4 48 72.9
Duzib052G0429 Durio zibethinus HOM05D000421 ORTHO05D001007 1.7e-10 68.9 62 56.5
Actinidia26188 Actinidia chinensis HOM05D000421 ORTHO05D001007 4.8e-10 67.4 55 60.0
COL.COLO4_17686 Corchorus olitorius HOM05D000421 ORTHO05D001007 4.8e-10 67.4 58 58.6
Actinidia00155 Actinidia chinensis HOM05D000421 ORTHO05D001007 6.3e-10 67.0 53 62.3
Duzib248G1382 Durio zibethinus HOM05D000421 ORTHO05D001007 1.4e-09 65.9 56 58.9
Thecc.02G012700 Theobroma cacao HOM05D000421 ORTHO05D001007 3.1e-09 64.7 49 63.3
Hma1.2p1_0052F.1_g029910 Hydrangea macrophylla HOM05D000421 ORTHO05D001007 9.1e-09 63.2 63 49.2
Gohir.A04G134300 Gossypium hirsutum HOM05D000421 ORTHO05D001007 1.2e-08 62.8 45 64.4
Gohir.D04G177500 Gossypium hirsutum HOM05D000421 ORTHO05D001007 1.2e-08 62.8 45 64.4
Gorai.012G170400 Gossypium raimondii HOM05D000421 ORTHO05D001007 1.2e-08 62.8 45 64.4
GSVIVG01023201001 Vitis vinifera HOM05D000421 ORTHO05D001007 1.6e-08 62.4 47 61.7
Atru.chr6.352 Acer truncatum HOM05D000421 ORTHO05D001007 2.7e-08 61.6 49 61.2
Atru.chr6.401 Acer truncatum HOM05D000421 ORTHO05D001007 2.7e-08 61.6 49 61.2
Cpa.g.sc113.3 Carica papaya HOM05D000421 ORTHO05D001007 5.9e-08 60.5 53 54.7
Ciclev10001347m.g Citrus clementina HOM05D000421 ORTHO05D001007 5.9e-08 60.5 49 59.2
MD15G1440900 Malus domestica HOM05D000421 ORTHO05D001007 1.0e-07 59.7 48 58.3
RcHm_v2.0_Chr7g0220251 Rosa chinensis HOM05D000421 ORTHO05D001007 1.0e-07 59.7 47 59.6
Prupe.1G583200 Prunus persica HOM05D000421 ORTHO05D001007 1.3e-07 59.3 44 61.4
THA.LOC104809032 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 1.3e-07 59.3 51 56.9
CANSAT01G0797 Cannabis sativa HOM05D000421 ORTHO05D001007 1.7e-07 58.9 48 60.4
AUR62033788 Chenopodium quinoa HOM05D000421 ORTHO05D001007 2.9e-07 58.2 65 46.2
MD08G1245700 Malus domestica HOM05D000421 ORTHO05D001007 2.9e-07 58.2 48 58.3
TWI23G0288 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 2.9e-07 58.2 51 51.0
Nn1g08745 Nelumbo nucifera HOM05D000074 ORTHO05D001793 3.8e-07 57.8 58 44.8
Cfa006271 Carpinus fangiana HOM05D000421 ORTHO05D001007 5.0e-07 57.4 57 43.9
CiPaw.07G079400 Carya illinoinensis HOM05D000421 ORTHO05D001007 5.0e-07 57.4 53 45.3
Nn1g09789 Nelumbo nucifera HOM05D000421 ORTHO05D001007 6.6e-07 57.0 58 43.1
TAR365G0705 Trochodendron aralioides HOM05D000421 ORTHO05D001007 6.6e-07 57.0 49 49.0
EL10Ac6g14015 Beta vulgaris HOM05D000421 ORTHO05D001007 8.6e-07 56.6 44 61.4
Cc02_g23460 Coffea canephora HOM05D000421 ORTHO05D012543 1.1e-06 56.2 58 50.0
Haze_04542 Corylus avellana HOM05D000421 ORTHO05D001007 1.5e-06 55.8 36 58.3
RcHm_v2.0_Chr6g0282241 Rosa chinensis HOM05D000421 ORTHO05D001007 1.5e-06 55.8 58 46.6
Manes.10G110400 Manihot esculenta HOM05D000421 ORTHO05D001007 1.9e-06 55.5 45 62.2
Potri.019G053000 Populus trichocarpa HOM05D000421 ORTHO05D001007 2.5e-06 55.1 51 47.1
AUR62029917 Chenopodium quinoa HOM05D000421 ORTHO05D001007 3.3e-06 54.7 65 44.6
CSS0010607 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 4.2e-06 54.3 36 61.1
CiPaw.05G002400 Carya illinoinensis HOM05D000421 ORTHO05D001007 4.2e-06 54.3 58 51.7
Nitab4.5_0001653g0070 Nicotiana tabacum HOM05D000421 ORTHO05D001007 4.2e-06 54.3 57 47.4
CSS0042733 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 7.2e-06 53.5 36 61.1
Dinv06975 Davidia involucrata HOM05D000421 ORTHO05D001007 7.2e-06 53.5 57 43.9
PGR142G0493 Punica granatum HOM05D000421 ORTHO05D001007 7.2e-06 53.5 48 50.0
Oeu000150.1 Olea europaea HOM05D000421 ORTHO05D001007 9.5e-06 53.1 63 46.0
GSVIVG01019122001 Vitis vinifera HOM05D000421 ORTHO05D001007 9.5e-06 53.1 44 59.1


User provided reference genes

Program Settings