Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 4.4e-50 201.1 107 100.0
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 2.9e-33 145.2 100 77.0
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.5e-31 138.3 98 77.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.4e-27 126.3 99 68.7
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 3.1e-27 125.2 99 67.7
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 5.3e-27 124.4 98 68.4
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 9.0e-27 123.6 104 66.3
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.0e-26 122.5 99 69.7
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 4.9e-25 117.9 86 69.8
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 4.2e-24 114.8 87 69.0
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 4.2e-24 114.8 97 64.9
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.2e-24 114.8 96 62.5
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 5.4e-24 114.4 106 56.6
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 9.3e-24 113.6 104 62.5
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 9.3e-24 113.6 97 63.9
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 1.6e-23 112.8 87 65.5
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 2.1e-23 112.5 101 59.4
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.7e-23 112.1 102 56.9
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.7e-23 112.1 102 56.9
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 4.6e-23 111.3 101 57.4
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 6.0e-23 110.9 95 61.1
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 6.0e-23 110.9 105 59.0
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 7.9e-23 110.5 100 58.0
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.0e-22 110.2 100 57.0
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.3e-22 109.8 86 67.4
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.3e-22 109.8 106 55.7
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 1.8e-22 109.4 99 58.6
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.8e-22 109.4 106 55.7
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.3e-22 109.0 102 56.9
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 2.3e-22 109.0 90 61.1
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.0e-22 108.6 99 57.6
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 3.0e-22 108.6 88 65.9
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 5.1e-22 107.8 92 59.8
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 6.7e-22 107.5 84 64.3
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 6.7e-22 107.5 95 61.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 8.7e-22 107.1 99 57.6
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.1e-21 106.7 88 63.6
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.1e-21 106.7 87 65.5
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 1.5e-21 106.3 97 59.8
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.9e-21 105.9 95 61.1
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.9e-21 105.9 99 58.6
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 3.3e-21 105.1 93 59.1
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 3.3e-21 105.1 83 65.1
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 5.6e-21 104.4 95 61.1
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 9.6e-21 103.6 107 54.2
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.6e-20 102.8 105 58.1
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 1.6e-20 102.8 87 60.9
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 2.1e-20 102.4 89 65.2
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 3.7e-20 101.7 82 64.6
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.4e-19 99.8 95 58.9
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.4e-19 99.0 87 62.1
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 3.1e-19 98.6 104 51.9
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.1e-19 98.6 100 54.0
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 4.0e-19 98.2 85 62.4
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 4.0e-19 98.2 87 62.1
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 5.3e-19 97.8 87 60.9
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 6.9e-19 97.4 82 61.0
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 6.9e-19 97.4 82 61.0
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 6.9e-19 97.4 82 61.0
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.9e-19 97.4 87 60.9
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.5e-18 96.3 92 57.6
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.0e-18 95.9 87 59.8
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 2.6e-18 95.5 84 60.7
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 9.9e-18 93.6 97 50.5
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 9.9e-18 93.6 92 51.1
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 1.3e-17 93.2 91 56.0
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 6.4e-17 90.9 97 51.5
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.4e-16 89.7 92 50.0
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.9e-16 89.4 85 57.6
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 1.9e-16 89.4 82 63.4
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 5.5e-16 87.8 91 56.0
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 7.1e-16 87.4 82 54.9
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 7.1e-16 87.4 82 56.1
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 1.6e-15 86.3 85 55.3
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.0e-14 83.6 82 54.9
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.8e-14 82.8 97 48.5
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 8.7e-14 80.5 69 63.8
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.3e-13 78.6 88 55.7
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 7.4e-13 77.4 92 47.8
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 7.4e-13 77.4 92 51.1
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 9.6e-13 77.0 92 52.2
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.3e-12 76.6 82 51.2
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 3.7e-12 75.1 89 47.2
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 1.8e-11 72.8 86 50.0
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 5.3e-11 71.2 62 59.7
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.3e-09 66.6 78 51.3
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 4.2e-08 61.6 86 44.2
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 6.7e-06 54.3 79 48.1


User provided reference genes

Program Settings