Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 3.2e-186 655.2 395 100.0
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 7.8e-84 315.1 411 51.3
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.9e-78 296.6 404 48.8
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 1.5e-71 274.2 407 47.9
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 7.1e-61 238.8 428 43.5
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.3e-58 228.8 418 46.4
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 1.6e-57 227.6 408 43.4
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.7e-54 217.6 417 40.8
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.0e-51 208.4 388 41.5
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 6.6e-51 205.7 418 39.0
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 3.3e-50 203.4 399 40.4
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 4.3e-50 203.0 396 44.7
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 8.4e-46 188.7 405 42.7
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 8.4e-46 188.7 386 44.0
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 5.4e-45 186.0 395 39.2
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 9.3e-45 185.3 352 40.9
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 6.0e-44 182.6 395 39.7
vmacro14422 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 3.9e-43 179.9 412 40.0
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 3.3e-42 176.8 383 44.4
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 4.3e-42 176.4 381 37.3
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 7.3e-42 175.6 418 34.7
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.3e-41 174.9 411 39.4
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.8e-41 173.7 273 45.4
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 6.2e-41 172.6 397 35.5
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.1e-41 172.2 423 34.8
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.1e-40 171.8 386 38.9
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 1.4e-40 171.4 409 35.5
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 5.3e-40 169.5 387 39.3
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.4e-39 166.8 438 39.5
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 4.5e-39 166.4 443 39.5
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 2.9e-38 163.7 408 40.4
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 2.9e-38 163.7 425 41.4
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 4.9e-38 162.9 388 39.4
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 6.4e-38 162.5 386 40.2
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 6.4e-38 162.5 410 38.3
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 5.4e-37 159.5 319 40.8
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 7.1e-37 159.1 316 39.6
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 1.2e-36 158.3 419 38.7
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 1.2e-36 158.3 373 34.6
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 2.1e-36 157.5 411 37.5
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 6.0e-36 156.0 385 40.0
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 7.9e-36 155.6 385 40.0
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 7.9e-36 155.6 294 38.1
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.0e-35 155.2 444 32.7
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.8e-35 154.5 381 36.5
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 1.8e-35 154.5 416 41.8
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 2.3e-35 154.1 388 37.9
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 3.9e-35 153.3 385 37.9
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 3.9e-35 153.3 388 40.7
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 6.7e-35 152.5 266 42.5
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.5e-34 151.4 391 34.3
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 7.4e-34 149.1 426 34.5
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 7.4e-34 149.1 401 41.1
Actinidia24117 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.6e-33 147.9 274 42.7
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.8e-33 147.1 391 35.0
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 4.8e-33 146.4 400 37.8
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 1.4e-32 144.8 421 39.0
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.3e-30 138.3 390 32.6
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 1.7e-30 137.9 389 34.2
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 2.2e-30 137.5 391 34.3
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.8e-30 136.7 372 33.6
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.8e-30 136.7 372 33.6
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.1e-29 135.2 408 33.1
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.2e-29 133.3 424 31.1
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 5.5e-29 132.9 404 31.4
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 1.2e-28 131.7 360 36.7
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 1.0e-27 128.6 395 33.9
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.8e-27 127.9 376 33.8
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.7e-27 125.9 413 29.8
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 2.5e-26 124.0 404 32.7
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 2.5e-26 124.0 376 35.1
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 4.3e-26 123.2 389 32.9
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 9.6e-26 122.1 367 31.3
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 9.6e-26 122.1 384 32.6
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 1.3e-25 121.7 395 33.2
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 3.7e-25 120.2 378 32.3
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 3.7e-25 120.2 371 41.2
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 6.2e-25 119.4 380 32.4
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.2e-25 119.4 161 47.2
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.4e-24 117.5 155 49.0
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 3.1e-24 117.1 123 49.6
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 3.1e-24 117.1 385 32.2
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.1e-24 117.1 403 32.3
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 1.5e-23 114.8 389 30.3
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 1.5e-23 114.8 413 32.7
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.0e-23 114.4 155 47.7
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.2e-22 110.9 146 47.9
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.8e-22 110.2 382 29.1
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 4.9e-22 109.8 389 30.8
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 4.9e-22 109.8 379 30.3
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 4.9e-22 109.8 261 34.5
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 8.4e-22 109.0 148 46.6
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 2.1e-20 104.4 106 53.8
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 2.1e-20 104.4 181 43.6
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 2.7e-20 104.0 383 32.6
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 3.5e-20 103.6 411 29.7
MSTRG.18675 Avicennia marina HOM05D001944 ORTHO05D002405 1.3e-19 101.7 349 30.4
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 2.3e-19 100.9 376 33.2
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 3.9e-19 100.1 368 28.5
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 1.9e-18 97.8 246 34.6
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 2.5e-18 97.4 397 30.5
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 2.5e-18 97.4 411 30.7
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 3.3e-18 97.1 393 29.0
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 9.7e-18 95.5 148 43.9
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 9.7e-18 95.5 182 37.9
Ca_19290_v3 Cicer arietinum L. HOM05D001944 ORTHO05D011318 8.2e-17 92.4 415 27.2
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 1.4e-16 91.7 173 41.0
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 1.4e-16 91.7 276 31.5
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 6.9e-16 89.4 168 38.7
Ciclev10029237m.g Citrus clementina HOM05D001944 ORTHO05D002405 6.9e-16 89.4 192 39.1
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 6.9e-16 89.4 231 35.1
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 9.0e-16 89.0 245 33.5
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 1.0e-14 85.5 134 41.8
FAN17G2018 Fragaria x ananassa HOM05D001944 ORTHO05D020674 2.2e-14 84.3 173 39.3
Migut.D02244 Erythranthe guttata HOM05D001944 ORTHO05D002405 2.9e-14 84.0 146 36.3
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 3.8e-14 83.6 268 31.0
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 8.5e-14 82.4 150 36.0
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 1.1e-13 82.0 175 34.9
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 1.4e-13 81.6 195 35.9
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 3.2e-13 80.5 145 40.7
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 3.2e-13 80.5 379 28.8
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 4.2e-13 80.1 175 34.3
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 4.2e-13 80.1 166 38.0
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 7.2e-13 79.3 117 43.6
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 9.4e-13 79.0 155 39.4
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 1.6e-12 78.2 378 29.1
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 2.1e-12 77.8 124 37.9
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 7.9e-12 75.9 237 32.5
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 1.0e-11 75.5 96 43.8
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 1.0e-11 75.5 96 49.0
HanXRQChr01g0019281 Helianthus annuus HOM05D001944 ORTHO05D002405 2.3e-11 74.3 75 52.0
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 3.9e-11 73.6 143 36.4
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 5.1e-11 73.2 143 36.4
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 6.7e-11 72.8 241 32.4
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 8.8e-11 72.4 134 40.3
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 8.8e-11 72.4 75 50.7
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.1e-10 72.0 85 44.7
HanXRQChr01g0019271 Helianthus annuus HOM05D001944 ORTHO05D002405 2.5e-10 70.9 183 32.8
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 1.3e-09 68.6 266 27.1
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 2.2e-09 67.8 156 37.2
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 2.8e-09 67.4 106 39.6
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 3.7e-09 67.0 129 35.7
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 8.2e-09 65.9 258 27.9
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 2.4e-08 64.3 79 46.8
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 2.4e-08 64.3 160 31.9
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 2.4e-08 64.3 82 41.5
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 4.1e-08 63.5 85 41.2
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 9.1e-08 62.4 81 44.4
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 9.1e-08 62.4 106 37.7
SalBow3G3117 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.2e-07 62.0 115 32.2
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.2e-07 62.0 140 35.7
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 1.5e-07 61.6 157 30.6
DCAR_006069 Daucus carota HOM05D001944 ORTHO05D002405 2.6e-07 60.8 123 33.3
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 5.9e-07 59.7 127 35.4
Lsat_1_v5_gn_7_27800 Lactuca sativa HOM05D001944 ORTHO05D002405 7.7e-07 59.3 105 41.0
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 1.3e-06 58.5 86 36.0
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 1.3e-06 58.5 133 33.8
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.7e-06 58.2 148 31.8
HPP92_003459 Vanilla planifolia HOM05D041147 ORTHO05D017225 2.2e-06 57.8 96 37.5
CDE02G3605 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 2.9e-06 57.4 97 38.1
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 2.9e-06 57.4 85 37.6
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 2.9e-06 57.4 79 48.1
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 3.8e-06 57.0 137 29.9
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 3.8e-06 57.0 132 34.1
HPP92_003456 Vanilla planifolia HOM05D041147 ORTHO05D017225 3.8e-06 57.0 141 33.3
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 5.0e-06 56.6 128 34.4
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 5.0e-06 56.6 130 33.1
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.5e-06 55.8 82 41.5


User provided reference genes

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