Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.4e-188 662.9 365 100.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.4e-132 476.1 366 75.4
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.7e-131 472.6 367 74.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.6e-128 463.4 352 75.6
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.8e-128 462.6 365 72.9
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.2e-124 448.7 338 76.3
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.7e-122 443.4 369 71.3
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.3e-121 438.0 371 71.2
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.0e-119 432.2 367 70.6
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 6.9e-119 431.4 366 69.9
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.6e-113 411.8 359 68.5
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 9.0e-111 404.4 384 63.0
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 4.9e-109 398.7 337 70.9
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.6e-107 393.7 364 65.4
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 4.6e-107 392.1 370 67.0
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 5.6e-105 385.2 360 64.4
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.4e-103 380.6 370 63.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.8e-103 380.2 367 65.4
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 9.0e-103 377.9 368 63.6
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-102 377.1 348 64.1
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.3e-101 374.0 333 67.0
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 3.8e-101 372.5 369 65.3
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 8.4e-101 371.3 360 62.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.2e-100 369.4 364 61.5
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.1e-99 366.7 361 61.8
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.8e-98 363.6 360 60.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 6.2e-96 355.1 362 59.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.1e-95 354.4 360 59.2
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.1e-92 344.4 371 60.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.1e-92 344.4 351 61.8
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.5e-91 339.3 365 59.2
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 9.7e-89 331.3 356 59.8
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.1e-87 327.8 368 57.1
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.4e-87 326.6 368 59.5
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 3.1e-87 326.2 307 60.9
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.1e-87 325.9 366 57.4
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 6.9e-87 325.1 368 57.3
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 9.0e-87 324.7 370 56.5
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.0e-86 323.6 378 56.9
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.6e-86 323.2 359 56.8
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.4e-86 322.8 374 56.7
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.2e-85 320.1 363 57.0
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 3.8e-85 319.3 362 53.3
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.1e-84 317.8 358 57.8
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.4e-84 317.4 338 59.5
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.4e-84 317.4 369 55.6
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.2e-84 315.8 365 55.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.2e-84 315.8 374 54.8
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.2e-83 314.3 365 55.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.6e-83 313.9 373 56.3
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.0e-82 311.2 389 54.0
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.4e-82 310.8 374 54.5
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.0e-82 309.7 357 57.4
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.7e-82 308.5 355 58.6
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 8.8e-82 308.1 366 53.8
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.8e-82 308.1 360 57.8
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 7.4e-81 305.1 364 55.8
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 7.4e-81 305.1 362 55.2
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.8e-80 303.1 362 53.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.7e-80 302.8 365 52.9
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.4e-79 300.1 348 56.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-78 297.4 361 53.5
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.0e-78 297.0 365 52.6
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.4e-78 296.2 347 56.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 7.7e-78 295.0 368 54.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.2e-77 293.5 329 55.0
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 8.5e-77 291.6 359 53.2
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.4e-76 290.8 361 53.5
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.4e-76 290.8 345 54.5
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.2e-76 289.7 372 52.7
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 5.5e-76 288.9 365 51.8
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 9.4e-76 288.1 354 52.8
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-75 287.7 357 52.9
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.1e-75 287.0 361 55.7
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.7e-75 286.6 340 55.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 3.6e-75 286.2 363 52.9
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 4.7e-75 285.8 377 52.8
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.0e-74 284.6 372 52.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.4e-74 284.3 376 51.6
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.9e-74 282.7 375 52.5
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 6.7e-74 282.0 368 53.5
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.7e-73 278.9 323 52.0
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 7.4e-73 278.5 330 52.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 7.4e-73 278.5 365 51.8
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.8e-72 275.8 364 53.0
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 6.3e-72 275.4 366 50.8
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 8.2e-72 275.0 399 49.9
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.8e-71 273.9 365 51.0
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.8e-71 273.9 372 50.8
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.4e-71 273.5 361 51.8
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 3.1e-71 273.1 361 53.7
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.2e-70 271.2 375 51.2
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.6e-70 270.0 394 49.5
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.6e-70 270.0 359 50.4
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 3.5e-70 269.6 373 50.9
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 5.9e-70 268.9 366 49.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.9e-69 266.5 371 50.1
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 3.8e-69 266.2 358 52.8
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.2e-68 262.7 330 51.8
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.2e-67 261.2 369 51.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 8.8e-66 255.0 363 50.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.1e-65 254.6 351 50.1
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-65 253.8 362 51.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.6e-65 253.4 364 50.5
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.3e-64 251.1 365 49.0
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.4e-63 247.7 388 47.9
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.1e-63 246.5 250 59.6
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 7.0e-63 245.4 402 48.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.1e-60 238.0 378 46.0
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.3e-58 230.3 321 49.2
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 3.0e-58 229.9 377 46.4
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 7.0e-55 218.8 363 45.5
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.0e-53 214.9 356 44.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.7e-51 206.8 362 44.8
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 3.6e-51 206.5 356 43.0
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 3.6e-51 206.5 354 44.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.0e-50 203.0 413 40.0
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 6.8e-50 202.2 306 48.0
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 7.5e-49 198.7 373 40.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 7.0e-47 192.2 360 43.6
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 5.9e-46 189.1 371 41.0
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 2.3e-45 187.2 371 41.2
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.8e-45 186.4 346 44.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 6.6e-45 185.7 325 44.9
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.1e-44 184.9 419 38.2
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.6e-43 179.9 255 49.8
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 6.1e-43 179.1 374 41.7
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 6.1e-43 179.1 371 41.0
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 6.1e-43 179.1 371 41.0
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 6.1e-43 179.1 371 41.0
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 4.1e-39 166.4 367 39.2
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 7.8e-30 135.6 183 50.3
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.6e-27 126.7 404 31.2
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 4.7e-11 73.2 180 29.4
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.1e-10 72.0 69 63.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.8e-10 71.2 239 27.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 5.2e-10 69.7 181 30.9
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.5e-09 68.2 180 29.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 2.0e-09 67.8 170 31.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.4e-09 67.0 129 36.4
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 4.4e-09 66.6 129 36.4
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 4.4e-09 66.6 202 29.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 5.8e-09 66.2 193 34.2
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 9.9e-09 65.5 210 31.0
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.7e-08 64.7 181 30.4
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 2.2e-08 64.3 137 30.7
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 2.2e-08 64.3 219 30.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 2.9e-08 63.9 166 31.3
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 3.8e-08 63.5 216 27.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 4.9e-08 63.2 111 36.0
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.4e-07 61.6 174 29.9
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.4e-07 61.6 79 41.8
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.4e-07 61.6 235 27.7
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.4e-07 60.8 137 29.2
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.4e-07 60.8 61 44.3
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 3.2e-07 60.5 134 29.1
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 3.2e-07 60.5 174 29.9
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 3.2e-07 60.5 80 38.8
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 4.2e-07 60.1 122 34.4
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.2e-07 60.1 156 30.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 4.2e-07 60.1 209 29.2
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 5.4e-07 59.7 101 33.7
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 7.1e-07 59.3 196 30.6
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 7.1e-07 59.3 142 30.3
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 9.3e-07 58.9 41 70.7
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 9.3e-07 58.9 205 27.8
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.2e-06 58.5 187 29.4
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 2.1e-06 57.8 183 26.8
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 4.6e-06 56.6 177 26.6
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 6.0e-06 56.2 146 32.2
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 7.8e-06 55.8 119 34.5


User provided reference genes

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