Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 8.4e-100 367.1 194 100.0
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.6e-90 336.3 194 90.2
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 3.3e-88 328.6 195 90.3
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.8e-86 322.8 193 88.6
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.3e-86 321.2 193 88.1
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 5.3e-86 321.2 194 86.1
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 9.1e-86 320.5 195 87.7
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 9.1e-86 320.5 195 87.7
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 4.5e-85 318.2 195 87.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 4.5e-85 318.2 195 86.7
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 5.9e-85 317.8 195 87.2
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 7.7e-85 317.4 195 86.2
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.0e-84 317.0 195 86.2
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.9e-84 315.5 196 84.7
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 8.5e-84 313.9 197 85.8
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 8.5e-84 313.9 196 84.2
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 8.5e-84 313.9 196 84.2
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 8.5e-84 313.9 197 85.8
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.1e-83 313.5 195 87.2
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.9e-83 312.8 194 83.5
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 2.5e-83 312.4 197 84.8
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 2.5e-83 312.4 194 86.1
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.5e-83 312.4 195 85.6
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 3.2e-83 312.0 197 84.3
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.2e-83 312.0 197 85.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 4.2e-83 311.6 195 85.6
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 4.2e-83 311.6 195 85.6
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 5.5e-83 311.2 195 85.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 7.2e-83 310.8 196 83.7
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.2e-83 310.8 196 83.7
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 9.4e-83 310.5 197 84.3
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 9.4e-83 310.5 195 85.1
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 9.4e-83 310.5 197 84.8
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.2e-82 310.1 195 85.6
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.6e-82 309.7 197 84.8
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.6e-82 309.7 197 82.7
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 2.7e-82 308.9 193 86.0
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 3.6e-82 308.5 195 84.6
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 3.6e-82 308.5 195 84.6
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 4.7e-82 308.1 195 84.1
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 4.7e-82 308.1 192 83.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 6.1e-82 307.8 197 84.3
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 1.0e-81 307.0 197 83.8
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.0e-81 307.0 195 84.1
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.4e-81 306.6 189 85.7
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.4e-81 306.6 195 85.6
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.8e-81 306.2 198 82.3
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.8e-81 306.2 197 82.7
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.8e-81 306.2 194 83.5
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 1.8e-81 306.2 197 83.2
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.3e-81 305.8 189 85.2
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 3.0e-81 305.4 188 86.2
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 3.0e-81 305.4 188 86.2
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 3.0e-81 305.4 193 82.4
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 3.0e-81 305.4 193 82.4
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 3.0e-81 305.4 193 82.4
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 3.9e-81 305.1 188 85.6
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 5.1e-81 304.7 188 86.2
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 8.8e-81 303.9 188 85.6
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 8.8e-81 303.9 194 82.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.1e-80 303.5 188 85.1
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.5e-80 303.1 188 84.6
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 2.0e-80 302.8 197 82.2
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 2.6e-80 302.4 196 82.1
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 3.3e-80 302.0 188 84.6
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 4.4e-80 301.6 193 82.9
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 4.4e-80 301.6 188 84.6
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 5.7e-80 301.2 195 84.1
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 9.7e-80 300.4 188 85.1
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 9.7e-80 300.4 192 84.4
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 1.7e-79 299.7 189 84.1
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.2e-79 299.3 195 84.1
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 3.7e-79 298.5 196 80.6
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 82.6
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 9.1e-78 293.9 194 83.0
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.2e-77 293.5 204 79.9
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.6e-77 292.4 194 78.4
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 4.5e-77 291.6 191 81.7
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 5.9e-77 291.2 190 80.0
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 7.7e-77 290.8 198 78.3
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.9e-76 288.9 194 77.8
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.0e-76 288.1 194 77.3
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.0e-76 288.1 194 76.8
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 8.5e-76 287.3 180 85.0
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.9e-75 286.2 194 80.4
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 5.5e-75 284.6 194 76.8
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 3.6e-74 282.0 195 81.0
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 3.6e-74 282.0 195 81.0
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.0e-73 278.9 194 75.3
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 3.0e-73 278.9 189 79.9
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 5.2e-73 278.1 191 79.6
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 7.5e-72 274.2 174 84.5
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 9.7e-72 273.9 192 76.0
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.3e-71 273.5 191 79.6
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.4e-70 270.0 195 77.9
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.4e-70 270.0 184 80.4
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.4e-70 269.2 197 70.6
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 2.9e-68 262.3 184 74.5
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 5.0e-68 261.5 182 75.3
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 6.5e-68 261.2 187 74.3
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 2.5e-67 259.2 190 74.7
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 2.7e-66 255.8 184 71.7
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 8.0e-66 254.2 196 73.5
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 9.8e-64 247.3 201 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 3.7e-63 245.4 189 66.7
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 2.4e-62 242.7 203 64.0
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 2.7e-61 239.2 186 68.3
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 3.5e-61 238.8 136 90.4
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 5.9e-61 238.0 211 62.1
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.9e-60 235.7 192 71.4
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.5e-59 232.6 194 70.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.8e-57 226.5 132 89.4
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.5e-56 223.4 184 60.9
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 3.1e-54 215.7 137 83.9
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.0e-53 213.0 200 64.0
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.9e-47 192.6 167 65.3
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.1e-43 180.6 126 82.5
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.0e-41 174.1 115 81.7
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 8.9e-41 171.0 122 76.2
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.5e-40 170.2 101 82.2
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.7e-31 140.2 166 44.6
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 3.2e-30 136.0 135 60.7
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 4.6e-29 132.1 97 72.2
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.5e-27 126.3 106 67.9
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.6e-26 123.6 106 66.0
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 2.2e-23 113.2 84 75.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.0e-20 104.4 72 81.9
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 8.1e-18 94.7 170 31.2
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 8.9e-17 91.3 69 71.0
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 4.4e-16 89.0 45 88.9
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 6.4e-15 85.1 162 34.0
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 8.7e-12 74.7 45 80.0
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 1.3e-07 60.8 54 70.4
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 68.5


User provided reference genes

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