Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.1e-38 161.4 86 100.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.0e-37 158.7 86 97.7
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 2.5e-35 151.8 86 91.9
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 4.2e-35 151.0 86 90.7
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 4.7e-34 147.5 86 88.4
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.9e-33 144.4 86 87.2
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.1e-32 142.9 86 84.9
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 1.5e-32 142.5 86 87.2
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.0e-32 142.1 86 84.9
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.6e-32 141.7 86 84.9
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 4.4e-32 141.0 86 83.7
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.7e-32 139.8 86 86.0
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.7e-32 139.8 86 86.0
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 9.7e-32 139.8 86 83.7
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.7e-31 139.0 86 86.0
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.7e-31 139.0 86 86.0
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.2e-31 138.7 86 83.7
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 4.8e-31 137.5 86 79.1
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 4.8e-31 137.5 86 81.4
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 6.3e-31 137.1 86 82.6
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 6.3e-31 137.1 86 81.4
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.4e-30 136.0 86 81.4
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.4e-30 135.2 86 82.6
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 4.1e-30 134.4 86 80.2
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 4.1e-30 134.4 87 85.1
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 5.3e-30 134.0 86 80.2
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 7.0e-30 133.7 84 82.1
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 9.1e-30 133.3 86 80.2
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 9.1e-30 133.3 86 77.9
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 1.2e-29 132.9 86 80.2
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 1.6e-29 132.5 86 81.4
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.6e-29 132.5 86 79.1
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.6e-29 132.5 86 80.2
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.6e-29 132.5 86 80.2
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 2.6e-29 131.7 87 81.6
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.6e-29 131.7 86 76.7
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 2.6e-29 131.7 86 81.4
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 3.5e-29 131.3 86 76.7
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 4.5e-29 131.0 86 76.7
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 4.5e-29 131.0 86 76.7
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.5e-29 131.0 86 76.7
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.5e-29 131.0 86 76.7
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 4.5e-29 131.0 84 81.0
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.5e-29 131.0 84 78.6
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 5.9e-29 130.6 86 75.6
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 5.9e-29 130.6 87 78.2
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 7.7e-29 130.2 86 80.2
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 7.7e-29 130.2 86 77.9
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 7.7e-29 130.2 86 76.7
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.0e-28 129.8 86 75.6
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.0e-28 129.8 86 75.6
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.0e-28 129.8 86 75.6
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 3.8e-28 127.9 84 75.0
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 5.0e-28 127.5 86 77.9
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 5.0e-28 127.5 86 74.4
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 5.0e-28 127.5 84 77.4
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 6.5e-28 127.1 84 75.0
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 8.5e-28 126.7 86 77.9
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 8.5e-28 126.7 86 75.6
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 8.5e-28 126.7 86 77.9
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 1.5e-27 125.9 84 75.0
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.5e-27 125.9 86 74.4
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.5e-27 125.9 86 74.4
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 1.5e-27 125.9 86 73.3
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 1.5e-27 125.9 86 77.9
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.5e-27 125.9 86 76.7
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.5e-27 125.2 86 76.7
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 2.5e-27 125.2 84 71.4
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 2.5e-27 125.2 86 77.9
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 3.2e-27 124.8 86 76.7
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 3.2e-27 124.8 86 74.4
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 3.2e-27 124.8 84 75.0
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.5e-27 124.0 86 76.7
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 5.5e-27 124.0 86 70.9
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 5.5e-27 124.0 85 78.8
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 7.2e-27 123.6 84 78.6
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 7.2e-27 123.6 85 74.1
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 9.4e-27 123.2 86 76.7
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 9.4e-27 123.2 86 75.6
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 9.4e-27 123.2 86 74.4
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.2e-26 122.9 86 76.7
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-26 122.9 85 77.6
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 1.2e-26 122.9 86 72.1
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.1e-26 122.1 86 77.9
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 2.7e-26 121.7 86 73.3
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 2.7e-26 121.7 84 77.4
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 3.6e-26 121.3 86 70.9
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 3.6e-26 121.3 86 70.9
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 3.6e-26 121.3 86 75.6
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 8.0e-26 120.2 86 72.1
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 8.0e-26 120.2 84 76.2
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 8.0e-26 120.2 84 76.2
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.0e-26 120.2 86 74.4
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 8.0e-26 120.2 86 73.3
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.0e-25 119.8 86 74.4
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 1.4e-25 119.4 86 75.6
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.4e-25 119.4 84 76.2
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 1.4e-25 119.4 86 70.9
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.8e-25 119.0 86 74.4
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 1.8e-25 119.0 87 71.3
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 70.9
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 70.9
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 70.9
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 72.1
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 72.1
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 2.3e-25 118.6 86 73.3
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.3e-25 118.6 87 71.3
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 3.0e-25 118.2 86 70.9
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 3.0e-25 118.2 86 70.9
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 3.0e-25 118.2 86 72.1
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.0e-25 118.2 83 73.5
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 4.0e-25 117.9 86 70.9
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 4.0e-25 117.9 86 72.1
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 4.0e-25 117.9 84 73.8
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 5.2e-25 117.5 86 72.1
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 1.5e-24 115.9 86 69.8
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 1.5e-24 115.9 86 69.8
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 2.0e-24 115.5 86 70.9
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 2.6e-24 115.2 84 69.0
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 2.6e-24 115.2 84 72.6
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 3.3e-24 114.8 86 68.6
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 3.3e-24 114.8 87 71.3
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 7.5e-24 113.6 84 67.9
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 9.7e-24 113.2 124 56.5
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 9.7e-24 113.2 86 69.8
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.7e-23 112.5 86 69.8
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.7e-23 112.5 111 59.5
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.7e-23 112.5 99 65.7
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 3.7e-23 111.3 84 71.4
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 4.8e-23 110.9 86 69.8
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 6.3e-23 110.5 86 68.6
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 1.1e-22 109.8 84 71.4
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 2.4e-22 108.6 86 65.1
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 5.3e-22 107.5 88 69.3
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 7.0e-22 107.1 86 65.1
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 7.0e-22 107.1 86 68.6
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.7e-20 102.4 88 62.5
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 2.2e-20 102.1 88 62.5
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 5.0e-20 100.9 86 66.3
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 6.5e-20 100.5 147 46.3
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 1.1e-19 99.8 77 74.0
GSVIVG01036624001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.1e-19 99.8 66 80.3
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 1.2e-18 96.3 85 57.6
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 2.1e-18 95.5 87 59.8
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 3.0e-17 91.7 84 60.7
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 6.8e-17 90.5 86 64.0
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 6.8e-17 90.5 91 57.1
CSS0032359 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D024713 2.2e-15 85.5 47 95.7
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 6.3e-15 84.0 78 65.4
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.3e-15 84.0 78 65.4
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.3e-15 84.0 78 65.4
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 3.5e-13 78.2 47 85.1
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 5.9e-13 77.4 93 50.5
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 3.8e-12 74.7 46 82.6
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 8.6e-12 73.6 71 50.7
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 8.6e-12 73.6 58 75.9
Rhsim05G0167400 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.2e-10 69.7 40 82.5
Zm00001eb346500 Zea mays HOM05D003590 ORTHO05D024713 2.8e-10 68.6 46 82.6
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 6.1e-10 67.4 58 69.0
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 8.0e-10 67.0 85 45.9
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.8e-09 65.9 42 76.2
Zm00001eb122710 Zea mays HOM05D003590 ORTHO05D024713 4.0e-09 64.7 44 81.8
Zm00001eb002340 Zea mays HOM05D003590 ORTHO05D024713 1.7e-07 59.3 40 82.5
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 6.3e-07 57.4 86 43.0
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 1.4e-06 56.2 80 48.8


User provided reference genes

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