Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 2.2e-70 268.9 134 100.0
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.2e-56 221.1 116 95.7
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.2e-56 221.1 116 95.7
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.2e-56 221.1 116 95.7
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 8.3e-54 213.8 119 90.8
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 1.8e-48 196.1 119 83.2
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.7e-47 191.0 97 97.9
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 9.8e-47 190.3 121 77.7
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 3.7e-46 188.3 119 77.3
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.4e-45 185.7 121 76.9
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 3.1e-45 185.3 130 75.4
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 4.1e-45 184.9 121 76.0
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 5.4e-45 184.5 120 79.2
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 5.4e-45 184.5 119 77.3
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 7.0e-45 184.1 121 75.2
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.6e-44 183.0 121 74.4
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.6e-44 183.0 121 74.4
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.0e-44 182.6 121 75.2
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 2.0e-44 182.6 121 74.4
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 2.7e-44 182.2 119 75.6
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 3.5e-44 181.8 121 74.4
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 1.0e-43 180.3 119 73.1
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.8e-43 178.3 114 77.2
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 5.0e-43 177.9 119 74.8
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 6.6e-43 177.6 119 74.8
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 6.6e-43 177.6 119 74.8
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 8.6e-43 177.2 117 75.2
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 1.1e-42 176.8 119 73.1
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 1.1e-42 176.8 140 65.0
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 1.5e-42 176.4 121 72.7
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.5e-42 176.4 119 73.1
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 1.9e-42 176.0 121 73.6
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 4.2e-42 174.9 119 74.8
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 9.5e-42 173.7 121 72.7
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 9.5e-42 173.7 119 74.8
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 9.5e-42 173.7 119 69.7
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 1.2e-41 173.3 119 68.9
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.2e-41 173.3 121 71.1
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.6e-41 172.9 119 72.3
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 1.6e-41 172.9 119 74.8
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 1.6e-41 172.9 119 73.9
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 1.6e-41 172.9 119 73.1
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 2.1e-41 172.6 119 72.3
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 2.1e-41 172.6 121 68.6
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 2.1e-41 172.6 119 71.4
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 2.1e-41 172.6 119 71.4
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 2.1e-41 172.6 119 71.4
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 2.8e-41 172.2 119 71.4
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 2.8e-41 172.2 119 71.4
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 2.8e-41 172.2 119 70.6
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 3.6e-41 171.8 119 70.6
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 4.7e-41 171.4 121 70.2
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 6.1e-41 171.0 119 72.3
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 6.1e-41 171.0 119 70.6
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 6.1e-41 171.0 119 72.3
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-41 170.6 119 71.4
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-41 170.6 119 71.4
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-41 170.6 119 71.4
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-41 170.6 119 71.4
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 1.0e-40 170.2 119 69.7
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 1.4e-40 169.9 119 71.4
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 1.4e-40 169.9 121 69.4
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 1.8e-40 169.5 121 70.2
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 1.8e-40 169.5 115 69.6
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 2.3e-40 169.1 119 72.3
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.0e-40 168.7 119 69.7
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 2.6e-39 165.6 121 71.1
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 2.6e-39 165.6 119 69.7
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 4.4e-39 164.9 119 68.9
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 4.4e-39 164.9 121 68.6
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 5.7e-39 164.5 121 68.6
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 5.7e-39 164.5 121 68.6
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 9.8e-39 163.7 119 68.1
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 9.8e-39 163.7 118 72.0
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 1.7e-38 162.9 119 68.1
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 2.2e-38 162.5 121 64.5
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 2.2e-38 162.5 121 64.5
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 2.2e-38 162.5 121 64.5
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 2.2e-38 162.5 119 71.4
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 2.2e-38 162.5 119 68.1
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 2.9e-38 162.2 121 64.5
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 4.9e-38 161.4 121 64.5
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 6.4e-38 161.0 121 67.8
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 1.8e-37 159.5 122 65.6
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 3.2e-37 158.7 116 69.0
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 3.2e-37 158.7 121 66.1
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 3.2e-37 158.7 119 68.1
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 4.1e-37 158.3 119 65.5
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 5.4e-37 157.9 121 67.8
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 5.4e-37 157.9 119 67.2
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 7.0e-37 157.5 121 64.5
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 7.0e-37 157.5 113 69.9
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 7.0e-37 157.5 115 69.6
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 9.2e-37 157.1 121 62.8
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 9.2e-37 157.1 121 64.5
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 1.2e-36 156.8 119 66.4
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 1.6e-36 156.4 119 63.9
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 2.0e-36 156.0 109 69.7
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 2.7e-36 155.6 121 62.0
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 3.5e-36 155.2 119 68.9
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 3.5e-36 155.2 121 65.3
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 4.6e-36 154.8 121 62.8
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 5.9e-36 154.5 121 62.0
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 5.9e-36 154.5 122 63.1
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 5.9e-36 154.5 121 62.0
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 5.9e-36 154.5 121 62.0
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 7.8e-36 154.1 121 62.0
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 1.0e-35 153.7 121 64.5
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 1.3e-35 153.3 121 62.0
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 1.3e-35 153.3 121 62.0
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 1.3e-35 153.3 121 62.0
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 1.7e-35 152.9 119 64.7
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 2.9e-35 152.1 121 59.5
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 3.9e-35 151.8 120 62.5
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 3.9e-35 151.8 119 64.7
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 3.9e-35 151.8 121 65.3
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 5.0e-35 151.4 121 61.2
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 6.6e-35 151.0 120 65.0
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 6.6e-35 151.0 109 67.0
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.1e-34 150.2 130 62.3
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 9.5e-34 147.1 119 60.5
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 1.2e-33 146.7 126 60.3
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 1.0e-32 143.7 120 58.3
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 1.4e-32 143.3 121 58.7
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.8e-32 142.9 116 64.7
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 1.8e-32 142.9 95 72.6
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 5.2e-32 141.4 104 67.3
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 5.2e-32 141.4 119 58.8
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 5.2e-32 141.4 119 58.8
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 1.2e-31 140.2 112 64.3
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 1.2e-31 140.2 120 54.2
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 7.5e-31 137.5 126 56.3
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 6.4e-30 134.4 119 59.7
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 8.3e-30 134.0 119 56.3
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 2.4e-29 132.5 118 58.5
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 3.2e-29 132.1 85 76.5
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 5.4e-29 131.3 132 52.3
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 4.6e-28 128.3 94 69.1
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 1.3e-27 126.7 108 60.2
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.7e-27 126.3 119 53.8
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 1.5e-26 123.2 94 62.8
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 4.3e-26 121.7 88 64.8
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 9.5e-26 120.6 120 55.8
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 8.1e-25 117.5 109 56.0
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.4e-24 116.7 114 51.8
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 8.9e-24 114.0 119 53.8
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 8.9e-24 114.0 111 55.0
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 2.6e-23 112.5 145 46.2
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 8.3e-22 107.5 131 46.6
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 1.2e-20 103.6 132 47.0
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 2.7e-20 102.4 125 51.2
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 2.7e-20 102.4 111 48.6
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 3.0e-19 99.0 71 69.0
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 2.0e-15 86.3 105 41.9
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 3.2e-13 79.0 109 39.4
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 1.6e-12 76.6 124 37.9
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 2.1e-12 76.3 81 50.6
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 7.8e-12 74.3 130 33.1
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 1.0e-11 73.9 121 41.3
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 5.1e-11 71.6 121 37.2
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 5.1e-11 71.6 103 37.9
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 1.1e-10 70.5 104 39.4
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 1.1e-08 63.9 132 29.5
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.4e-08 63.5 99 37.4
TPR.G34410 Trifolium pratense HOM05D002316 ORTHO05D002280 1.2e-07 60.5 53 58.5
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 4.4e-07 58.5 132 31.1
AL1G61670 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 9.9e-07 57.4 101 35.6
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 9.9e-07 57.4 110 26.4
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 9.9e-07 57.4 104 28.8
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 2.2e-06 56.2 76 40.8
TPR.G11240 Trifolium pratense HOM05D002316 ORTHO05D002280 2.2e-06 56.2 85 32.9
CBR_g30616 Chara braunii HOM05D002316 ORTHO05D002280 4.9e-06 55.1 115 32.2
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 4.9e-06 55.1 108 26.9
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 4.9e-06 55.1 95 30.5
AUR62038474 Chenopodium quinoa HOM05D002316 ORTHO05D002280 6.4e-06 54.7 100 30.0
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 6.4e-06 54.7 85 31.8
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 8.4e-06 54.3 110 30.0


User provided reference genes

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