Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.9e-114 415.2 211 100.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.3e-90 335.9 200 85.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 3.1e-87 325.5 200 84.0
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 8.9e-87 323.9 202 82.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.4e-84 316.6 200 82.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.1e-84 315.1 209 77.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 9.2e-84 313.9 218 75.2
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.6e-80 302.0 201 75.6
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.8e-79 297.7 200 76.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 8.9e-79 297.4 199 74.9
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.2e-78 297.0 200 75.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.0e-78 296.2 200 74.5
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 9.9e-78 293.9 202 74.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-77 292.4 200 73.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 4.9e-77 291.6 201 73.6
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 6.4e-77 291.2 199 74.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.4e-77 290.8 200 74.0
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.9e-76 289.7 200 73.0
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 3.2e-76 288.9 200 72.5
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 3.2e-76 288.9 200 72.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.2e-76 288.5 198 73.7
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 7.1e-76 287.7 209 70.3
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.6e-75 286.6 200 71.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.1e-75 286.2 198 73.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.1e-75 286.2 200 74.0
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.5e-75 285.4 199 73.9
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.6e-75 285.0 200 72.5
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.3e-74 282.7 196 73.0
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.0e-74 282.3 198 73.7
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 6.6e-74 281.2 207 71.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.9e-73 279.6 198 71.7
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 5.6e-73 278.1 201 69.7
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.8e-72 275.8 202 71.3
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.6e-72 275.4 196 70.9
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 8.1e-72 274.2 205 68.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.1e-71 273.9 203 70.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.4e-71 273.5 197 71.1
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.8e-71 273.1 196 69.9
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.3e-71 271.6 199 71.4
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.5e-70 270.0 200 70.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.5e-70 270.0 205 68.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.6e-70 269.2 198 67.7
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.4e-70 268.9 200 70.0
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 7.6e-70 267.7 200 68.0
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-69 266.9 199 68.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.7e-69 266.5 202 68.3
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.9e-69 265.8 198 65.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.9e-69 265.0 202 68.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.1e-68 263.8 203 68.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.9e-68 263.1 217 62.2
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 4.2e-68 261.9 198 69.2
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 4.2e-68 261.9 198 66.7
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.2e-68 261.9 225 62.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.1e-68 261.2 202 67.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.2e-67 260.4 201 66.2
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.1e-67 259.6 202 65.3
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.7e-67 259.2 198 67.7
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.5e-67 258.8 181 72.4
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.5e-67 258.8 201 66.7
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 6.0e-67 258.1 203 68.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.0e-66 257.3 207 63.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.0e-66 257.3 199 64.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.3e-66 256.9 215 63.7
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.3e-66 256.9 201 67.2
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.7e-66 256.5 225 62.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.3e-66 256.1 196 65.8
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 2.3e-66 256.1 225 62.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-66 255.8 207 63.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.0e-66 255.8 207 65.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 3.0e-66 255.8 199 64.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 5.1e-66 255.0 191 68.1
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 6.6e-66 254.6 208 67.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.7e-66 254.2 204 62.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.5e-65 253.4 195 65.6
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.9e-65 253.1 193 66.3
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 3.3e-65 252.3 198 62.6
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 4.3e-65 251.9 200 66.5
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.3e-65 251.1 200 66.5
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 9.6e-65 250.8 192 66.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.3e-64 250.4 200 68.0
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 8.1e-64 247.7 200 65.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.8e-63 246.5 197 66.5
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 4.0e-63 245.4 262 56.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.0e-62 243.0 190 65.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 3.4e-62 242.3 198 65.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 9.9e-62 240.7 197 63.5
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-61 240.4 200 62.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.3e-61 240.4 191 62.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.2e-61 239.6 200 58.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-60 236.1 161 73.9
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.4e-60 236.1 168 67.9
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 5.4e-60 235.0 194 60.8
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.1e-59 233.0 210 61.4
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.1e-59 233.0 194 60.3
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 3.5e-59 232.3 200 63.0
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 6.0e-59 231.5 203 61.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.0e-58 229.2 180 65.0
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 7.4e-57 224.6 299 47.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 9.6e-57 224.2 201 59.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.7e-56 222.2 201 58.7
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 6.2e-56 221.5 202 60.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 4.0e-55 218.8 193 58.5
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 6.9e-55 218.0 201 58.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.4e-54 215.7 198 57.1
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-53 213.4 196 55.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.8e-53 212.2 202 57.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.5e-53 211.5 203 56.2
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.9e-52 209.9 201 54.7
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.2e-51 207.2 197 59.9
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.6e-51 206.8 198 57.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.1e-51 206.5 200 57.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 7.9e-51 204.5 198 55.1
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 7.9e-51 204.5 198 55.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 7.9e-51 204.5 201 54.7
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.0e-50 204.1 198 55.1
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.0e-50 202.6 198 54.5
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.7e-50 201.1 187 58.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.5e-49 199.5 200 55.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.7e-48 195.7 199 53.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.1e-47 194.1 170 61.8
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.3e-47 191.8 106 90.6
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.3e-47 191.8 200 51.5
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.2e-45 186.4 105 89.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.1e-43 178.3 189 52.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.1e-43 178.3 189 52.9
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.8e-42 176.8 180 51.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 3.0e-42 176.0 170 57.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.3e-41 172.6 167 57.5
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 9.7e-41 171.0 128 64.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 5.9e-38 161.8 171 51.5
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-37 160.2 188 51.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 3.9e-34 149.1 100 73.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 4.3e-33 145.6 96 74.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 7.4e-33 144.8 165 43.6
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.4e-31 140.6 128 57.8
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 9.1e-31 137.9 104 71.2
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.5e-28 128.6 106 67.9
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.7e-27 126.3 129 55.8
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.0e-26 124.4 124 50.0
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.4e-26 124.0 99 63.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.8e-26 123.6 152 44.1
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 5.1e-26 122.1 105 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.5e-25 120.6 130 48.5
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.8e-24 115.5 117 55.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.8e-21 105.9 91 60.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.1e-20 104.4 177 37.3
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 4.7e-19 99.0 121 46.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.7e-19 99.0 121 47.1
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.3e-17 92.8 161 36.6
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.7e-16 89.4 67 71.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.2e-14 84.3 65 63.1
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.9e-13 79.7 127 34.6
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.9e-12 77.0 65 60.0
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 4.2e-12 75.9 66 63.6
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 7.2e-12 75.1 45 75.6
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.7e-11 73.2 57 68.4
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-06 57.0 47 55.3
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 2.7e-06 56.6 61 47.5
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 4.5e-06 55.8 33 72.7


User provided reference genes

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