Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007772 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 3.9e-24 114.0 59 100.0
CSS0029941 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 6.1e-17 90.1 58 81.0
Lj9C301T8 Lonicera japonica HOM05D001917 ORTHO05D002790 1.3e-14 82.4 58 72.4
Peaxi162Scf00003g03938 Petunia axillaris HOM05D001917 ORTHO05D002790 2.8e-14 81.3 47 87.2
Peaxi162Scf00011g00747 Petunia axillaris HOM05D001917 ORTHO05D002790 4.8e-14 80.5 49 85.7
Lalb_Chr13g0295631 Lupinus albus HOM05D001917 ORTHO05D002790 6.3e-14 80.1 49 85.7
Nitab4.5_0000667g0140 Nicotiana tabacum HOM05D001917 ORTHO05D002790 6.3e-14 80.1 47 87.2
AUR62016492 Chenopodium quinoa HOM05D001917 ORTHO05D002790 1.8e-13 78.6 53 77.4
Nitab4.5_0000548g0190 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.8e-13 78.6 47 85.1
Nitab4.5_0009812g0050 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.8e-13 78.6 47 85.1
FAN18G1669 Fragaria x ananassa HOM05D001917 ORTHO05D002790 4.1e-13 77.4 49 79.6
AUR62011669 Chenopodium quinoa HOM05D001917 ORTHO05D002790 5.3e-13 77.0 49 81.6
unitig_52.g17437 Utricularia gibba HOM05D001917 ORTHO05D002790 5.3e-13 77.0 47 83.0
Sabra03G0007900 Salix brachista HOM05D001917 ORTHO05D002790 1.2e-12 75.9 56 69.6
vmacro01735 Vaccinium macrocarpon HOM05D001917 ORTHO05D002790 1.2e-12 75.9 44 86.4
Duzib132G0781 Durio zibethinus HOM05D001917 ORTHO05D002790 2.0e-12 75.1 42 92.9
Solyc01g103873.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 2.0e-12 75.1 49 79.6
Solyc01g103875.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 2.0e-12 75.1 49 79.6
Thecc.02G090500 Theobroma cacao HOM05D001917 ORTHO05D002790 2.0e-12 75.1 49 79.6
Gohir.A04G121926 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.4e-12 74.3 56 69.6
Gohir.D04G163200 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.4e-12 74.3 49 79.6
Gohir.D04G163400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.4e-12 74.3 49 79.6
Gorai.012G151300 Gossypium raimondii HOM05D001917 ORTHO05D002790 3.4e-12 74.3 49 79.6
Sopen01g046250 Solanum pennellii HOM05D001917 ORTHO05D002790 3.4e-12 74.3 49 77.6
Manes.07G020850 Manihot esculenta HOM05D001917 ORTHO05D002790 4.5e-12 73.9 49 77.6
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 5.9e-12 73.6 49 77.6
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 5.9e-12 73.6 42 88.1
Manes.10G123800 Manihot esculenta HOM05D001917 ORTHO05D002790 5.9e-12 73.6 49 75.5
FAN13G3267 Fragaria x ananassa HOM05D001917 ORTHO05D002790 7.7e-12 73.2 42 88.1
Nitab4.5_0008098g0040 Nicotiana tabacum HOM05D001917 ORTHO05D002790 7.7e-12 73.2 42 90.5
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 7.7e-12 73.2 42 88.1
Sopen01g046280 Solanum pennellii HOM05D001917 ORTHO05D002790 1.0e-11 72.8 49 77.6
AUR62040515 Chenopodium quinoa HOM05D001917 ORTHO05D002790 1.3e-11 72.4 44 88.6
COL.COLO4_11754 Corchorus olitorius HOM05D001917 ORTHO05D002790 1.3e-11 72.4 62 69.4
CiPaw.06G144000 Carya illinoinensis HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 75.5
Gohir.A13G036500 Gossypium hirsutum HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 77.6
Gohir.D13G034800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 77.6
Gorai.013G039300 Gossypium raimondii HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 77.6
Lsat_1_v5_gn_6_24641 Lactuca sativa HOM05D001917 ORTHO05D002790 1.7e-11 72.0 42 90.5
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 1.7e-11 72.0 42 85.7
Nitab4.5_0004437g0030 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 71.4
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 1.7e-11 72.0 49 77.6
Duzib052G0052 Durio zibethinus HOM05D001917 ORTHO05D002790 2.2e-11 71.6 49 75.5
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 2.2e-11 71.6 42 85.7
Prupe.1G575800 Prunus persica HOM05D001917 ORTHO05D002790 2.2e-11 71.6 42 88.1
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 2.9e-11 71.2 41 90.2
Peaxi162Scf00152g01525 Petunia axillaris HOM05D001917 ORTHO05D002790 2.9e-11 71.2 43 83.7
Peaxi162Scf00391g00618 Petunia axillaris HOM05D001917 ORTHO05D002790 2.9e-11 71.2 43 79.1
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 3.8e-11 70.9 49 75.5
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea HOM05D001917 ORTHO05D002790 3.8e-11 70.9 49 75.5
Dinv41740 Davidia involucrata HOM05D001917 ORTHO05D002790 3.8e-11 70.9 44 81.8
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 3.8e-11 70.9 41 90.2
Solyc10g044830.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 3.8e-11 70.9 54 72.2
TWI14G0546 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 3.8e-11 70.9 49 73.5
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 5.0e-11 70.5 49 73.5
MSTRG.5118 Avicennia marina HOM05D001917 ORTHO05D002790 6.5e-11 70.1 49 75.5
DCAR_006686 Daucus carota HOM05D001917 ORTHO05D002790 6.5e-11 70.1 42 83.3
Atru.chr12.2056 Acer truncatum HOM05D000003 ORTHO05D000022 8.5e-11 69.7 44 84.1
ECA236G0104 Erigeron canadensis HOM05D001917 ORTHO05D002790 8.5e-11 69.7 49 73.5
Lalb_Chr15g0090721 Lupinus albus HOM05D001917 ORTHO05D002790 8.5e-11 69.7 49 73.5
THA.LOC104807120 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 8.5e-11 69.7 49 75.5
THA.LOC104823694 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 8.5e-11 69.7 49 71.4
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 1.1e-10 69.3 42 85.7
PSO782G0466 Papaver somniferum HOM05D001917 ORTHO05D002790 1.1e-10 69.3 49 71.4
HanXRQChr06g0181281 Helianthus annuus HOM05D001917 ORTHO05D002790 1.9e-10 68.6 49 71.4
PSO170G4920 Papaver somniferum HOM05D001917 ORTHO05D002790 2.5e-10 68.2 49 69.4
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 2.5e-10 68.2 41 85.4
Eucgr.G00399 Eucalyptus grandis HOM05D001917 ORTHO05D002790 3.2e-10 67.8 40 87.5
Gorai.005G241600 Gossypium raimondii HOM05D001917 ORTHO05D002790 3.2e-10 67.8 42 83.3
MBI03_g13496_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 3.2e-10 67.8 41 87.8
Nitab4.5_0000948g0280 Nicotiana tabacum HOM05D001917 ORTHO05D002790 3.2e-10 67.8 40 90.0
Potri.004G219100 Populus trichocarpa HOM05D001917 ORTHO05D002790 3.2e-10 67.8 41 85.4
CAN.G544.4 Capsicum annuum HOM05D001917 ORTHO05D002790 4.2e-10 67.4 42 78.6
BcaB04g20186 Brassica carinata HOM05D001917 ORTHO05D002790 5.5e-10 67.0 41 82.9
Carub.0002s0651 Capsella rubella HOM05D001917 ORTHO05D002790 5.5e-10 67.0 41 82.9
Migut.N00836 Erythranthe guttata HOM05D001917 ORTHO05D002790 5.5e-10 67.0 42 83.3
Sp2g05470 Schrenkiella parvula HOM05D001917 ORTHO05D002790 5.5e-10 67.0 41 82.9
SGA_v2.0_scaffold24G10578 Striga asiatica HOM05D001917 ORTHO05D002790 7.2e-10 66.6 41 78.0
Lj3g0007989 Lotus japonicus HOM05D001917 ORTHO05D002790 9.4e-10 66.2 42 81.0
Solyc11g020950.3 Solanum lycopersicum HOM05D001917 ORTHO05D002790 9.4e-10 66.2 42 76.2
Sopen11g011090 Solanum pennellii HOM05D001917 ORTHO05D002790 9.4e-10 66.2 42 76.2
PGSC0003DMG400009283 Solanum tuberosum HOM05D001917 ORTHO05D002790 9.4e-10 66.2 42 76.2
AL2G18070 Arabidopsis lyrata HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
BcaC04g22117 Brassica carinata HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
A09p18550 Brassica napus HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
C09p23160 Brassica napus HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
BolC9t55235H Brassica oleracea HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
BraA09t37481Z Brassica rapa HOM05D001917 ORTHO05D002790 1.2e-09 65.9 41 80.5
Oeu049833.1 Olea europaea HOM05D001917 ORTHO05D002790 1.6e-09 65.5 36 94.4
Aa31LG2G10980 Aethionema arabicum HOM05D001917 ORTHO05D002790 2.1e-09 65.1 54 61.1
Lj5A255T86 Lonicera japonica HOM05D001917 ORTHO05D002790 2.1e-09 65.1 48 70.8
Oeu049834.1 Olea europaea HOM05D001917 ORTHO05D002790 2.1e-09 65.1 36 94.4
ECA240G0453 Erigeron canadensis HOM05D001917 ORTHO05D002790 2.7e-09 64.7 41 82.9
Thhalv10023533m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 3.6e-09 64.3 41 78.0
BcaC09g49511 Brassica carinata HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
A01p28180 Brassica napus HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
C01p35740 Brassica napus HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
BolC1t03533H Brassica oleracea HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
BraA01t02948Z Brassica rapa HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
Thhalv10023536m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 4.7e-09 63.9 41 78.0
Hma1.2p1_1928F.1_g307820 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 4.7e-09 63.9 35 88.6
unitig_8.g4531 Utricularia gibba HOM05D001917 ORTHO05D002790 4.7e-09 63.9 63 57.1
ATR1136G107 Amborella trichopoda HOM05D001917 ORTHO05D002790 7.9e-09 63.2 44 70.5
Sabra01G0166200 Salix brachista HOM05D001917 ORTHO05D002790 7.9e-09 63.2 41 80.5
Sc07g0005000 Simmondsia chinensis HOM05D001917 ORTHO05D002790 7.9e-09 63.2 49 67.3
Os11g0218000 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D002790 1.4e-08 62.4 41 75.6
QL09p005240 Quercus lobata HOM05D001917 ORTHO05D002790 1.4e-08 62.4 42 78.6
Zm00001eb169130 Zea mays HOM05D001917 ORTHO05D002790 1.4e-08 62.4 41 75.6
Migut.C01294 Erythranthe guttata HOM05D001917 ORTHO05D002790 2.3e-08 61.6 42 69.0
PSO017G7022 Papaver somniferum HOM05D001917 ORTHO05D002790 2.3e-08 61.6 41 75.6
PSO170G1283 Papaver somniferum HOM05D001917 ORTHO05D002790 2.3e-08 61.6 41 75.6
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 3.0e-08 61.2 40 75.0
Medtr3g005230 Medicago truncatula HOM05D001917 ORTHO05D002790 3.0e-08 61.2 41 78.0
Psat1g003160 Pisum sativum HOM05D001917 ORTHO05D002790 3.0e-08 61.2 41 78.0
Ca_13956_v3 Cicer arietinum L. HOM05D001917 ORTHO05D002790 3.9e-08 60.8 41 75.6
TPR.G25523 Trifolium pratense HOM05D001917 ORTHO05D002790 3.9e-08 60.8 41 75.6
unitig_578.g16345 Utricularia gibba HOM05D001917 ORTHO05D002790 3.9e-08 60.8 42 71.4
SGA_v2.0_scaffold3574G54364 Striga asiatica HOM05D001917 ORTHO05D012802 5.1e-08 60.5 39 79.5
HPP92_004469 Vanilla planifolia HOM05D001917 ORTHO05D002790 6.7e-08 60.1 41 73.2
HPP92_004486 Vanilla planifolia HOM05D001917 ORTHO05D002790 6.7e-08 60.1 41 73.2
CSS0018654 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 8.8e-08 59.7 30 100.0
Manes.02G083200 Manihot esculenta HOM05D001917 ORTHO05D002790 1.1e-07 59.3 42 66.7
Hund12943 Selenicereus undatus HOM05D001917 ORTHO05D002790 1.1e-07 59.3 37 81.1
VMungo0251G2048 Vigna mungo HOM05D001917 ORTHO05D002790 1.1e-07 59.3 33 90.9
GSVIVG01023292001 Vitis vinifera HOM05D001917 ORTHO05D002790 1.1e-07 59.3 33 90.9
MSTRG.1554 Avicennia marina HOM05D001917 ORTHO05D002790 1.5e-07 58.9 41 70.7
Cpa.g.sc38.34 Carica papaya HOM05D001917 ORTHO05D002790 2.0e-07 58.5 32 93.8
CiPaw.03G020100 Carya illinoinensis HOM05D001917 ORTHO05D002790 2.0e-07 58.5 41 78.0
Glyma.08G126500 Glycine max HOM05D001917 ORTHO05D002790 2.0e-07 58.5 32 93.8
Os12g0194600 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D002790 2.0e-07 58.5 40 72.5
Phvul.002G248500 Phaseolus vulgaris HOM05D001917 ORTHO05D002790 2.0e-07 58.5 32 93.8
Potri.003G014800 Populus trichocarpa HOM05D001917 ORTHO05D002790 2.6e-07 58.2 33 87.9
unitig_62.g23619 Utricularia gibba HOM05D001917 ORTHO05D002790 3.3e-07 57.8 31 90.3
EL10Ac1g00111 Beta vulgaris HOM05D001917 ORTHO05D002790 4.4e-07 57.4 47 63.8
CiPaw.05G050800 Carya illinoinensis HOM05D001917 ORTHO05D002790 4.4e-07 57.4 32 93.8
Potri.015G147800 Populus trichocarpa HOM05D001917 ORTHO05D002790 4.4e-07 57.4 42 69.0
Zm00001eb138730 Zea mays HOM05D001917 ORTHO05D002790 4.4e-07 57.4 40 70.0
Actinidia16113 Actinidia chinensis HOM05D001917 ORTHO05D002790 5.7e-07 57.0 42 71.4
CARHR053940 Cardamine hirsuta HOM05D001917 ORTHO05D002790 5.7e-07 57.0 35 80.0
Gohir.A03G192700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 7.4e-07 56.6 31 93.5
Eucgr.I02749 Eucalyptus grandis HOM05D001917 ORTHO05D002790 9.7e-07 56.2 31 93.5
TWI23G0075 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 9.7e-07 56.2 48 62.5
arahy.Tifrunner.gnm1.ann1.Z0L96X Arachis hypogaea HOM05D001917 ORTHO05D031601 1.3e-06 55.8 41 68.3
arahy.Tifrunner.gnm1.ann1.BCF1Q0 Arachis hypogaea HOM05D001917 ORTHO05D002790 1.7e-06 55.5 30 93.3
arahy.Tifrunner.gnm1.ann1.ICMC1Y Arachis hypogaea HOM05D001917 ORTHO05D002790 1.7e-06 55.5 30 93.3
arahy.Tifrunner.gnm1.ann1.IJEF9V Arachis hypogaea HOM05D000140 ORTHO05D000087 1.7e-06 55.5 30 93.3
EL10Ac9g22036 Beta vulgaris HOM05D001917 ORTHO05D002790 1.7e-06 55.5 30 93.3
MELO3C019429.2 Cucumis melo HOM05D001917 ORTHO05D002790 1.7e-06 55.5 30 93.3
Duzib248G0928 Durio zibethinus HOM05D001917 ORTHO05D002790 1.7e-06 55.5 42 71.4
PGSC0003DMG401024930 Solanum tuberosum HOM05D001917 ORTHO05D002790 1.7e-06 55.5 30 93.3
HanXRQChr17g0551161 Helianthus annuus HOM05D001917 ORTHO05D002790 2.2e-06 55.1 34 82.4
Rhsim07G0186900 Rhododendron simsii HOM05D001917 ORTHO05D002790 2.2e-06 55.1 41 68.3
AT1G58110 Arabidopsis thaliana HOM05D001917 ORTHO05D002790 2.8e-06 54.7 33 81.8
SalBow3G3660 Salvia bowleyana HOM05D001917 ORTHO05D002790 2.8e-06 54.7 42 71.4
Ciclev10001528m.g Citrus clementina HOM05D001917 ORTHO05D002790 3.7e-06 54.3 30 90.0
CsaV3_3G019270 Cucumis sativus L. HOM05D001917 ORTHO05D002790 3.7e-06 54.3 30 90.0
TPR.G6809 Trifolium pratense HOM05D001917 ORTHO05D002790 3.7e-06 54.3 30 90.0
DCAR_001831 Daucus carota HOM05D001917 ORTHO05D002790 4.8e-06 53.9 30 90.0
Ah.01g021660 Amaranthus hybridus HOM05D001917 ORTHO05D002790 6.3e-06 53.5 30 90.0
MSTRG.16506 Avicennia marina HOM05D001917 ORTHO05D002790 6.3e-06 53.5 29 93.1
Cpa.g.c30412.2 Carica papaya HOM05D001917 ORTHO05D002790 6.3e-06 53.5 42 66.7
Cc02_g22880 Coffea canephora HOM05D001917 ORTHO05D002790 6.3e-06 53.5 35 77.1
Haze_13897 Corylus avellana HOM05D001917 ORTHO05D002790 6.3e-06 53.5 44 65.9
Glyma.05G168100 Glycine max HOM05D001917 ORTHO05D002790 6.3e-06 53.5 29 93.1
Lalb_Chr07g0185821 Lupinus albus HOM05D001917 ORTHO05D002790 6.3e-06 53.5 29 93.1
Lalb_Chr12g0204531 Lupinus albus HOM05D001917 ORTHO05D002790 6.3e-06 53.5 29 93.1
Medtr8g088650 Medicago truncatula HOM05D001917 ORTHO05D002790 6.3e-06 53.5 29 93.1
ATR0661G486 Amborella trichopoda HOM05D001917 ORTHO05D002790 8.2e-06 53.1 41 65.9
Manes.07G020400 Manihot esculenta HOM05D001917 ORTHO05D002790 8.2e-06 53.1 30 86.7
QL02p099840 Quercus lobata HOM05D001917 ORTHO05D002790 8.2e-06 53.1 31 87.1


User provided reference genes

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