Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.7e-154 549.3 271 100.0
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 6.5e-98 361.3 311 63.7
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.9e-92 341.3 300 62.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.5e-91 340.1 308 60.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 6.5e-90 334.7 310 59.7
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.1e-88 328.2 304 60.2
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 7.9e-88 327.8 309 60.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.0e-87 327.4 306 59.5
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.4e-87 327.0 311 57.9
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.8e-87 326.6 310 60.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.3e-87 326.2 335 55.2
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 3.0e-87 325.9 305 57.7
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 6.7e-87 324.7 335 54.9
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-85 320.5 301 60.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.7e-85 320.1 309 58.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.7e-85 320.1 309 58.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.7e-85 318.9 301 60.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 8.2e-85 317.8 304 57.6
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 8.2e-85 317.8 309 57.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-84 315.5 300 59.3
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 7.0e-84 314.7 307 57.7
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.6e-83 312.8 302 57.0
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.6e-83 312.8 309 57.6
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 2.6e-83 312.8 306 58.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.6e-83 312.8 307 57.3
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.5e-83 312.0 301 58.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.3e-82 310.5 316 56.6
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.7e-82 310.1 306 57.5
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 6.5e-82 308.1 307 55.0
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.4e-81 307.0 273 61.2
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.9e-81 306.6 301 57.5
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.9e-81 306.6 304 56.6
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.2e-81 305.4 306 56.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 4.7e-80 302.0 311 55.9
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 4.7e-80 302.0 308 55.8
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 6.1e-80 301.6 305 55.7
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 8.8e-79 297.7 304 55.6
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.5e-78 297.0 302 54.3
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.5e-78 297.0 311 55.6
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.6e-78 296.2 308 54.9
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 4.4e-78 295.4 291 57.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 5.7e-78 295.0 322 52.5
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-77 293.9 306 55.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.7e-77 293.5 300 58.3
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.2e-77 293.1 324 54.3
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.8e-77 292.7 320 55.3
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 6.3e-77 291.6 306 53.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 8.2e-77 291.2 322 52.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.8e-76 290.0 322 52.5
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 2.4e-76 289.7 304 55.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 5.3e-76 288.5 305 53.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 7.0e-76 288.1 309 53.7
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 9.1e-76 287.7 308 55.8
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.0e-75 286.6 320 53.8
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 2.6e-75 286.2 310 53.9
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.9e-75 285.0 307 55.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 5.9e-75 285.0 300 52.3
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 7.7e-75 284.6 306 54.6
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.0e-74 284.3 309 54.0
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.3e-74 283.9 256 61.3
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-74 283.5 314 54.5
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-74 283.1 306 53.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.9e-74 282.7 324 52.2
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 5.0e-74 282.0 310 53.5
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.0e-74 282.0 307 53.1
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.5e-73 279.6 315 51.1
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 9.4e-73 277.7 303 55.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-72 277.3 314 53.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.6e-72 276.9 304 54.9
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.6e-72 276.9 312 54.2
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.7e-72 276.2 309 52.8
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.6e-72 275.8 325 51.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.5e-70 270.4 300 53.3
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.0e-70 270.0 309 51.8
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.3e-70 269.2 313 52.4
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.7e-69 266.9 301 51.2
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.1e-68 264.2 323 49.2
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.5e-67 259.2 311 50.2
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 4.5e-67 258.8 253 58.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.5e-67 258.8 313 50.8
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 7.7e-67 258.1 286 54.2
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 7.7e-67 258.1 306 52.0
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.0e-66 257.7 311 50.8
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.2e-64 250.8 306 52.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.0e-63 247.7 310 51.3
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.0e-63 246.1 317 47.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.8e-63 244.6 322 46.9
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-61 240.7 317 47.0
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 2.4e-60 236.5 299 47.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 9.1e-60 234.6 245 55.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.2e-59 234.2 316 49.1
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 7.7e-59 231.5 306 49.3
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.5e-57 227.3 305 47.9
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.5e-57 226.5 233 54.9
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.0e-55 219.5 393 37.9
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.0e-54 216.9 303 44.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 7.5e-54 214.9 316 47.5
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.7e-53 213.8 314 47.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.8e-53 213.0 336 43.5
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.7e-53 212.6 303 46.5
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.4e-52 209.9 303 46.2
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-52 209.5 299 47.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 4.1e-52 209.1 313 47.9
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.0e-52 208.4 312 46.5
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-51 207.6 313 47.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.0e-51 206.8 313 47.0
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.0e-51 206.8 313 47.0
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.7e-51 206.5 313 43.8
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 5.0e-50 202.2 308 41.9
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 8.6e-50 201.4 294 44.2
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.0e-47 194.5 268 48.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 9.8e-46 188.0 148 64.2
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.1e-44 184.5 278 46.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-41 174.1 138 61.6
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 9.5e-41 171.4 260 47.3
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.0e-38 163.7 305 40.3
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.2e-36 156.4 199 50.3
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 9.2e-36 154.8 145 57.2
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 3.0e-34 149.8 357 36.1
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.5e-33 146.7 115 62.6
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.4e-31 141.0 142 53.5
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 2.3e-31 140.2 297 40.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.1e-31 139.8 214 43.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-30 137.9 107 68.2
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.6e-30 136.7 145 54.5
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 3.4e-30 136.3 115 58.3
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.2e-29 133.7 284 39.8
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.4e-28 131.0 139 51.8
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-28 130.2 140 52.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 3.2e-28 129.8 132 58.3
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 3.2e-28 129.8 144 50.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 3.2e-28 129.8 140 52.9
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.1e-28 129.4 104 62.5
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 9.2e-28 128.3 142 50.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.3e-26 124.4 142 48.6
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-26 124.0 146 48.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-25 120.9 227 44.1
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.6e-25 119.0 146 49.3
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 5.6e-25 119.0 146 49.3
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 4.0e-23 112.8 109 56.9
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 3.8e-21 106.3 292 34.2
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 2.4e-20 103.6 131 46.6
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.2e-20 103.2 223 38.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 8.7e-18 95.1 240 32.1
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 6.2e-16 89.0 261 36.8
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.8e-15 87.4 261 36.4
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.4e-15 87.0 261 36.4
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.4e-12 77.0 79 54.4
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-11 74.7 136 41.2
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 3.5e-11 73.2 71 53.5
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.0e-10 71.6 56 60.7
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 3.0e-10 70.1 55 60.0
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 9.6e-09 65.1 75 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.2e-06 58.2 117 39.3
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 1.5e-06 57.8 66 53.0
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.5e-06 56.2 38 71.1


User provided reference genes

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