Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.4e-43 177.6 89 100.0
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.0e-23 110.9 81 72.8
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.4e-20 102.8 86 62.8
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.2e-19 99.8 86 61.6
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.2e-19 99.8 93 60.2
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 2.6e-19 98.6 86 65.1
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 7.5e-19 97.1 91 60.4
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.3e-18 96.3 88 59.1
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 8.3e-18 93.6 84 57.1
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.8e-17 92.4 87 56.3
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.4e-17 92.0 86 53.5
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 4.1e-17 91.3 77 58.4
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 4.1e-17 91.3 86 57.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 5.4e-17 90.9 88 54.5
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 7.0e-17 90.5 81 56.8
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.6e-16 89.4 63 71.4
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 2.7e-16 88.6 88 55.7
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.0e-15 86.7 94 52.1
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.3e-15 85.5 82 54.9
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.3e-15 85.5 82 56.1
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.9e-15 85.1 86 54.7
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.9e-15 85.1 86 52.3
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 3.8e-15 84.7 80 57.5
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.8e-15 84.7 81 50.6
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.8e-15 84.7 76 56.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.8e-15 84.7 86 52.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 3.8e-15 84.7 86 52.3
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 6.6e-15 84.0 80 53.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 8.6e-15 83.6 101 49.5
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.1e-14 83.2 82 52.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.1e-14 83.2 88 55.7
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.9e-14 82.4 86 54.7
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.9e-14 82.4 89 48.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.5e-14 82.0 81 50.6
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 2.5e-14 82.0 81 50.6
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 3.3e-14 81.6 80 52.5
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 4.2e-14 81.3 85 47.1
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 7.2e-14 80.5 79 57.0
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.2e-14 80.5 47 74.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.2e-14 80.5 47 74.5
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 7.2e-14 80.5 47 74.5
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 9.5e-14 80.1 61 63.9
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.2e-13 79.7 68 54.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.6e-13 79.3 86 50.0
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 4.7e-13 77.8 79 51.9
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.1e-13 77.4 80 51.2
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 8.0e-13 77.0 79 51.9
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.0e-12 76.6 48 68.8
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.8e-12 75.9 80 50.0
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.3e-12 75.5 69 55.1
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 2.3e-12 75.5 91 44.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.3e-12 75.5 80 52.5
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.3e-12 75.5 80 52.5
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-12 75.1 80 51.2
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-12 75.1 80 51.2
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-12 75.1 80 51.2
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 4.0e-12 74.7 60 55.0
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.0e-12 74.7 60 55.0
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.9e-12 73.6 80 50.0
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 4.4e-11 71.2 75 48.0
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 4.4e-11 71.2 76 48.7
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.4e-11 71.2 87 47.1
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 5.7e-11 70.9 81 46.9
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 5.7e-11 70.9 90 43.3
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.7e-11 70.9 76 46.1
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 7.5e-11 70.5 73 52.1
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.7e-10 69.3 68 54.4
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 2.2e-10 68.9 78 50.0
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 2.8e-10 68.6 81 50.6
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 4.9e-10 67.8 80 47.5
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 8.3e-10 67.0 80 46.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.4e-09 66.2 63 50.8
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.1e-09 64.7 52 51.9
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 7.0e-09 63.9 44 61.4
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 9.2e-09 63.5 75 46.7
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.2e-08 63.2 55 52.7
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.0e-08 62.4 44 61.4
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.0e-08 62.4 81 49.4
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.0e-08 62.4 36 75.0
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 2.7e-08 62.0 64 46.9
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 5.9e-08 60.8 63 49.2
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.3e-07 59.7 80 38.8
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.3e-07 58.9 82 41.5
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 5.0e-07 57.8 50 52.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.5e-06 55.5 80 42.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.3e-06 54.7 36 66.7
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.3e-06 54.7 36 66.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 5.6e-06 54.3 84 42.9
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 7.3e-06 53.9 87 32.2


User provided reference genes

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