Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.6e-32 139.8 67 100.0
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.5e-16 89.0 59 76.3
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.5e-16 89.0 59 76.3
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 8.4e-15 83.2 46 82.6
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.4e-14 81.6 46 78.3
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.4e-14 81.6 46 78.3
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 2.4e-14 81.6 46 78.3
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 3.2e-14 81.3 46 80.4
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 3.2e-14 81.3 46 80.4
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 5.5e-14 80.5 45 84.4
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 7.1e-14 80.1 46 76.1
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.7e-13 78.2 46 73.9
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 6.0e-13 77.0 46 76.1
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.0e-12 76.3 45 75.6
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.3e-12 75.9 46 76.1
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.3e-12 75.1 45 73.3
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 3.9e-12 74.3 45 71.1
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 3.9e-12 74.3 45 71.1
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 5.1e-12 73.9 46 73.9
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 5.1e-12 73.9 45 68.9
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 5.1e-12 73.9 46 73.9
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 5.1e-12 73.9 45 73.3
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.7e-12 73.6 46 67.4
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.7e-12 73.6 46 67.4
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 6.7e-12 73.6 46 67.4
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 1.1e-11 72.8 46 73.9
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 1.1e-11 72.8 46 76.1
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 1.1e-11 72.8 45 73.3
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 1.5e-11 72.4 45 73.3
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 1.9e-11 72.0 45 68.9
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.9e-11 72.0 45 75.6
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 2.5e-11 71.6 46 69.6
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.5e-11 71.6 45 71.1
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 3.3e-11 71.2 46 69.6
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 3.3e-11 71.2 45 66.7
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 3.3e-11 71.2 46 73.9
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.3e-11 70.9 46 67.4
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 4.3e-11 70.9 46 69.6
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 4.3e-11 70.9 45 73.3
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 5.6e-11 70.5 46 69.6
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 7.4e-11 70.1 51 62.7
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 7.4e-11 70.1 46 69.6
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 7.4e-11 70.1 45 71.1
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 7.4e-11 70.1 46 69.6
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 9.6e-11 69.7 59 54.2
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 9.6e-11 69.7 45 68.9
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.3e-10 69.3 46 67.4
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.3e-10 69.3 45 66.7
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 1.6e-10 68.9 46 65.2
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 1.6e-10 68.9 46 67.4
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 2.1e-10 68.6 45 71.1
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 2.1e-10 68.6 45 66.7
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 2.1e-10 68.6 45 66.7
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 2.1e-10 68.6 45 68.9
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 2.1e-10 68.6 45 71.1
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.8e-10 68.2 45 68.9
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 2.8e-10 68.2 46 67.4
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 2.8e-10 68.2 45 66.7
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 3.7e-10 67.8 46 65.2
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 3.7e-10 67.8 45 68.9
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 3.7e-10 67.8 46 67.4
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 3.7e-10 67.8 46 67.4
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 4.8e-10 67.4 46 65.2
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 4.8e-10 67.4 45 66.7
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.8e-10 67.4 45 66.7
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 4.8e-10 67.4 45 66.7
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 4.8e-10 67.4 46 69.6
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 6.2e-10 67.0 45 68.9
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 6.2e-10 67.0 45 66.7
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 8.2e-10 66.6 45 64.4
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 8.2e-10 66.6 46 65.2
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 8.2e-10 66.6 46 67.4
Zm00001eb094930 Zea mays HOM05D003385 ORTHO05D003844 8.2e-10 66.6 45 62.2
Zm00001eb303930 Zea mays HOM05D003385 ORTHO05D003844 8.2e-10 66.6 45 62.2
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 64.4
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 64.4
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 1.1e-09 66.2 46 65.2
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.1e-09 66.2 45 66.7
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 1.4e-09 65.9 45 66.7
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 1.4e-09 65.9 45 62.2
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 1.4e-09 65.9 45 62.2
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 1.4e-09 65.9 46 67.4
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 1.8e-09 65.5 45 66.7
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 1.8e-09 65.5 46 63.0
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 1.8e-09 65.5 45 64.4
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 2.4e-09 65.1 46 63.0
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 2.4e-09 65.1 45 64.4
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 3.1e-09 64.7 45 64.4
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.1e-09 64.7 45 62.2
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 3.1e-09 64.7 45 62.2
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 3.1e-09 64.7 46 63.0
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 3.1e-09 64.7 45 64.4
Sc25g0000080 Simmondsia chinensis HOM05D003385 ORTHO05D003844 3.1e-09 64.7 44 63.6
A04p27190 Brassica napus HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 64.4
BraA04t18217Z Brassica rapa HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 64.4
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 64.4
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 66.7
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 66.7
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 66.7
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 4.0e-09 64.3 45 62.2
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 62.2
BcaC02g07674 Brassica carinata HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 64.4
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 5.3e-09 63.9 46 60.9
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 5.3e-09 63.9 46 60.9
C04p64700 Brassica napus HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 64.4
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 5.3e-09 63.9 46 60.9
BolC4t27948H Brassica oleracea HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 64.4
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 64.4
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 5.3e-09 63.9 46 60.9
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 60.0
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 62.2
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 5.3e-09 63.9 45 64.4
Carub.0007s2496 Capsella rubella HOM05D003385 ORTHO05D003844 6.9e-09 63.5 45 62.2
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 9.0e-09 63.2 45 62.2
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 9.0e-09 63.2 45 62.2
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 9.0e-09 63.2 46 60.9
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 9.0e-09 63.2 45 62.2
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 9.0e-09 63.2 45 62.2
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 9.0e-09 63.2 45 62.2
CARHR222940 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.2e-08 62.8 45 60.0
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 1.2e-08 62.8 45 60.0
HanXRQChr02g0049331 Helianthus annuus HOM05D003385 ORTHO05D003844 1.2e-08 62.8 45 62.2
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 1.2e-08 62.8 45 62.2
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 1.2e-08 62.8 45 60.0
Os07g0239500 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 1.5e-08 62.4 45 57.8
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.5e-08 62.4 45 64.4
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 2.0e-08 62.0 46 58.7
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 2.0e-08 62.0 45 60.0
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 2.0e-08 62.0 46 56.5
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 2.0e-08 62.0 44 65.9
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 2.0e-08 62.0 45 60.0
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 2.0e-08 62.0 45 60.0
Solyc08g078790.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 2.0e-08 62.0 45 60.0
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 2.6e-08 61.6 45 60.0
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 2.6e-08 61.6 45 60.0
DCAR_020191 Daucus carota HOM05D003385 ORTHO05D003844 2.6e-08 61.6 46 63.0
Gohir.D11G083700 Gossypium hirsutum HOM05D003385 ORTHO05D003844 3.4e-08 61.2 45 57.8
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.4e-08 61.2 44 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 4.5e-08 60.8 45 57.8
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 4.5e-08 60.8 45 60.0
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 4.5e-08 60.8 45 60.0
FAN25G0283 Fragaria x ananassa HOM05D003385 ORTHO05D003844 4.5e-08 60.8 45 60.0
Prupe.5G071800 Prunus persica HOM05D003385 ORTHO05D003844 4.5e-08 60.8 45 57.8
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 5.8e-08 60.5 45 57.8
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 5.8e-08 60.5 45 57.8
AL7G38420 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 1.0e-07 59.7 45 57.8
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.0e-07 59.7 46 54.3
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 1.0e-07 59.7 46 56.5
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 1.0e-07 59.7 46 54.3
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.0e-07 59.7 46 54.3
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.0e-07 59.7 46 54.3
BcaNung00182 Brassica carinata HOM05D003385 ORTHO05D003844 1.3e-07 59.3 45 57.8
SHI13910 Sapria himalayana HOM05D003385 ORTHO05D003844 1.3e-07 59.3 41 63.4
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.7e-07 58.9 41 61.0
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 1.7e-07 58.9 46 54.3
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 3.8e-07 57.8 46 54.3
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 3.8e-07 57.8 45 57.8
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.8e-07 57.8 46 54.3
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 3.8e-07 57.8 44 52.3
BcaC09g50363 Brassica carinata HOM05D003385 ORTHO05D003844 4.9e-07 57.4 45 53.3
C01p26210 Brassica napus HOM05D003385 ORTHO05D003844 4.9e-07 57.4 45 53.3
BolC1t02564H Brassica oleracea HOM05D003385 ORTHO05D003844 4.9e-07 57.4 45 53.3
BolC1t02565H Brassica oleracea HOM05D003385 ORTHO05D003844 4.9e-07 57.4 45 53.3
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 6.5e-07 57.0 46 52.2
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 6.5e-07 57.0 46 54.3
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 6.5e-07 57.0 40 57.5
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 8.4e-07 56.6 46 54.3
Medtr5g012410 Medicago truncatula HOM05D003385 ORTHO05D003844 8.4e-07 56.6 45 60.0
Pp3c13_2320 Physcomitrium patens HOM05D003385 ORTHO05D003844 8.4e-07 56.6 46 52.2
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 8.4e-07 56.6 45 53.3
arahy.Tifrunner.gnm1.ann1.I3YFFK Arachis hypogaea HOM05D003385 ORTHO05D003844 1.1e-06 56.2 35 65.7
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 1.1e-06 56.2 45 57.8
Aqoxy5G03905 Aquilegia oxysepala HOM05D003385 ORTHO05D003844 1.4e-06 55.8 45 51.1
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 1.4e-06 55.8 46 54.3
A01p20880 Brassica napus HOM05D003385 ORTHO05D003844 1.9e-06 55.5 45 55.6
Migut.B01603 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.9e-06 55.5 45 55.6
BraA01t02007Z Brassica rapa HOM05D003385 ORTHO05D003844 2.5e-06 55.1 45 53.3
Cc02_g24330 Coffea canephora HOM05D003385 ORTHO05D003844 3.2e-06 54.7 45 53.3
AUR62007503 Chenopodium quinoa HOM05D001320 ORTHO05D002136 4.2e-06 54.3 36 66.7
EL10Ac5g13053 Beta vulgaris HOM05D003385 ORTHO05D003844 5.5e-06 53.9 36 69.4


User provided reference genes

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