Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 7.2e-45 183.7 105 100.0
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.3e-43 178.7 105 91.4
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 1.1e-24 116.7 101 74.3
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 2.0e-23 112.5 98 67.3
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.2e-22 109.0 104 63.5
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.2e-22 109.0 104 63.5
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.9e-22 108.6 104 63.5
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 6.1e-20 100.9 105 59.0
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 8.0e-20 100.5 101 59.4
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 1.8e-19 99.4 105 57.1
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 2.3e-19 99.0 102 63.7
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 3.0e-19 98.6 105 59.0
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 4.0e-19 98.2 106 56.6
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 5.2e-19 97.8 102 57.8
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 1.5e-18 96.3 100 57.0
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 2.0e-18 95.9 95 67.4
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 2.6e-18 95.5 99 65.7
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 1.3e-17 93.2 99 57.6
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.7e-17 92.8 103 51.5
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 1.7e-17 92.8 96 52.1
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 1.7e-17 92.8 102 54.9
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 4.8e-17 91.3 97 52.6
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 4.8e-17 91.3 99 53.5
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 1.1e-16 90.1 103 56.3
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 1.1e-16 90.1 100 57.0
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 1.1e-16 90.1 100 57.0
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 1.4e-16 89.7 103 55.3
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 1.4e-16 89.7 100 55.0
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 1.8e-16 89.4 100 57.0
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 2.4e-16 89.0 103 60.2
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 2.4e-16 89.0 103 60.2
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 2.4e-16 89.0 103 60.2
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 3.1e-16 88.6 110 50.9
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 3.1e-16 88.6 110 50.9
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 3.1e-16 88.6 110 50.9
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 3.1e-16 88.6 103 55.3
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 4.1e-16 88.2 103 54.4
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 7.0e-16 87.4 110 53.6
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 7.0e-16 87.4 103 59.2
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 7.0e-16 87.4 110 50.9
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 7.0e-16 87.4 109 51.4
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 7.0e-16 87.4 101 62.4
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 9.1e-16 87.0 103 55.3
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 9.1e-16 87.0 103 55.3
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 9.1e-16 87.0 91 56.0
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.2e-15 86.7 97 50.5
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 1.6e-15 86.3 100 54.0
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 2.0e-15 85.9 96 55.2
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 2.0e-15 85.9 106 50.9
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 2.7e-15 85.5 103 54.4
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.7e-15 85.5 109 51.4
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 2.7e-15 85.5 104 51.0
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 2.7e-15 85.5 101 54.5
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 4.5e-15 84.7 99 51.5
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 5.9e-15 84.3 92 59.8
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 5.9e-15 84.3 92 60.9
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 5.9e-15 84.3 92 59.8
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 5.9e-15 84.3 92 59.8
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 5.9e-15 84.3 109 52.3
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 7.7e-15 84.0 110 50.9
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 7.7e-15 84.0 99 58.6
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 1.0e-14 83.6 103 51.5
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 1.3e-14 83.2 96 50.0
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 1.3e-14 83.2 103 48.5
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.7e-14 82.8 92 58.7
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 2.2e-14 82.4 99 59.6
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 2.2e-14 82.4 96 61.5
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 2.9e-14 82.0 100 52.0
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 3.8e-14 81.6 108 52.8
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 3.8e-14 81.6 100 51.0
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 6.5e-14 80.9 98 49.0
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 6.5e-14 80.9 104 53.8
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 8.5e-14 80.5 92 60.9
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 1.1e-13 80.1 108 49.1
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 1.1e-13 80.1 99 53.5
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 1.1e-13 80.1 80 60.0
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 1.5e-13 79.7 102 51.0
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 1.9e-13 79.3 104 52.9
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 1.9e-13 79.3 113 55.8
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 1.9e-13 79.3 107 52.3
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 2.5e-13 79.0 102 49.0
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 4.2e-13 78.2 107 51.4
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 5.5e-13 77.8 104 49.0
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 5.5e-13 77.8 93 52.7
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 7.2e-13 77.4 104 49.0
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 9.5e-13 77.0 100 50.0
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 1.2e-12 76.6 99 49.5
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 1.6e-12 76.3 110 47.3
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 2.7e-12 75.5 101 48.5
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 2.7e-12 75.5 106 48.1
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 2.7e-12 75.5 101 52.5
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 3.6e-12 75.1 102 48.0
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 6.1e-12 74.3 102 49.0
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 6.1e-12 74.3 94 52.1
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 8.0e-12 73.9 104 49.0
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 3.0e-11 72.0 97 47.4
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 4.0e-11 71.6 104 47.1
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 4.0e-11 71.6 109 46.8
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 4.0e-11 71.6 102 50.0
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.2e-10 70.1 107 51.4
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 1.2e-10 70.1 100 49.0
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 1.5e-10 69.7 101 52.5
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 2.0e-10 69.3 101 48.5
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.6e-10 68.9 107 50.5
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 3.4e-10 68.6 101 48.5
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 1.1e-08 63.5 108 50.0
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 2.4e-08 62.4 93 48.4
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 3.1e-08 62.0 105 49.5
vmacro13884 Vaccinium macrocarpon HOM05D000086 ORTHO05D002912 5.4e-08 61.2 48 64.6
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 1.2e-07 60.1 107 46.7
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 1.2e-07 60.1 107 46.7
Migut.G00009 Erythranthe guttata HOM05D000086 ORTHO05D002912 7.7e-07 57.4 101 49.5
GSVIVG01019585001 Vitis vinifera HOM05D000086 ORTHO05D002912 3.8e-06 55.1 71 62.0
DCAR_002543 Daucus carota HOM05D000086 ORTHO05D002912 5.0e-06 54.7 96 42.7
CiPaw.11G117600 Carya illinoinensis HOM05D000086 ORTHO05D002912 6.6e-06 54.3 91 49.5
Sabra13G0081100 Salix brachista HOM05D000086 ORTHO05D002912 8.6e-06 53.9 96 37.5


User provided reference genes

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