Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 7.2e-234 813.5 408 100.0
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 5.4e-189 664.5 403 84.4
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 5.0e-187 657.9 408 83.1
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.2e-176 621.3 403 78.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 9.9e-175 617.1 411 78.6
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.2e-164 583.6 396 76.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 5.1e-163 578.2 404 72.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.9e-162 576.2 396 74.2
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.6e-159 565.8 398 71.6
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 2.3e-155 552.7 404 71.0
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 6.2e-153 544.7 406 69.5
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 7.6e-151 537.7 403 70.0
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.3e-150 537.0 414 68.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.9e-150 535.8 394 70.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.4e-150 534.6 398 69.6
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.4e-149 533.5 394 70.1
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.2e-149 531.9 401 69.6
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 5.4e-149 531.6 410 65.6
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.6e-148 530.0 394 70.1
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.1e-148 529.6 405 66.9
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 6.0e-148 528.1 406 68.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.0e-148 528.1 398 68.6
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.3e-147 526.9 400 66.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.8e-147 526.6 395 69.9
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 2.3e-147 526.2 401 68.3
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.0e-147 525.8 395 68.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 8.1e-145 517.7 405 64.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 6.9e-144 514.6 408 65.9
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 5.8e-143 511.5 408 65.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 9.9e-143 510.8 401 66.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.4e-142 507.7 396 65.7
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.1e-141 507.3 386 69.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.2e-141 505.8 402 65.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.2e-141 505.8 393 67.2
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 9.3e-141 504.2 456 61.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.7e-140 502.7 405 64.2
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.8e-139 500.0 394 67.0
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.7e-139 498.0 396 65.2
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.3e-138 495.7 396 66.4
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 3.3e-138 495.7 410 63.7
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 5.6e-138 495.0 397 64.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-137 492.7 413 61.0
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.8e-136 490.0 457 58.2
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.4e-136 489.6 398 63.8
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 5.3e-136 488.4 404 62.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.3e-136 488.4 404 62.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 6.9e-136 488.0 404 62.9
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 9.0e-136 487.6 400 64.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.5e-135 486.9 406 62.3
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-135 485.7 404 62.1
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.8e-135 485.0 397 64.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 7.6e-135 484.6 398 64.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.7e-134 483.4 410 61.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.2e-134 483.0 397 64.5
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.2e-134 483.0 398 64.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.9e-134 481.9 406 62.3
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-133 480.3 404 61.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-133 480.3 404 61.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.9e-133 479.9 396 62.4
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 5.5e-133 478.4 407 60.9
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 5.5e-133 478.4 406 61.8
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.6e-132 476.9 407 64.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.0e-131 474.2 396 62.9
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 6.7e-131 471.5 402 62.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.1e-130 470.7 400 62.0
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 3.3e-130 469.2 409 60.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.3e-129 467.2 408 59.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.3e-128 461.8 406 61.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.5e-127 460.3 405 60.7
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.0e-127 459.9 402 59.5
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.0e-126 457.6 402 60.9
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-126 457.2 397 61.0
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.7e-126 456.8 431 56.8
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.2e-126 456.4 430 59.5
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 2.2e-126 456.4 396 59.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.0e-126 455.3 399 61.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.0e-126 455.3 401 60.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.5e-125 453.0 401 60.3
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 3.2e-125 452.6 409 60.4
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.1e-124 449.9 396 58.6
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.0e-123 446.0 396 58.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 6.7e-123 444.9 397 59.9
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 2.0e-122 443.4 373 63.0
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.3e-122 442.2 396 59.3
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 7.4e-122 441.4 411 59.4
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 3.1e-120 436.0 397 58.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.3e-118 430.6 403 57.8
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.9e-118 429.5 295 72.9
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 6.1e-116 421.8 399 58.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 3.9e-115 419.1 404 57.7
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 5.1e-115 418.7 402 56.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.4e-112 409.8 467 51.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.0e-112 408.3 401 57.1
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.5e-111 407.1 423 51.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 4.5e-111 405.6 388 56.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 4.5e-111 405.6 414 52.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.0e-110 404.4 402 55.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 8.8e-107 391.3 421 51.5
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.6e-106 389.8 402 54.7
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 7.4e-106 388.3 402 55.5
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 9.7e-106 387.9 399 54.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 4.8e-105 385.6 404 53.2
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 9.1e-104 381.3 318 63.8
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 4.2e-101 372.5 468 46.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.1e-100 370.2 273 68.5
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.8e-99 367.1 402 51.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.2e-97 360.1 246 76.8
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.7e-95 353.2 403 52.9
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 7.7e-95 351.7 357 55.2
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.3e-91 340.1 387 51.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 7.5e-90 335.1 412 49.8
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 7.5e-90 335.1 401 47.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.8e-89 333.2 267 61.8
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.6e-84 316.2 413 47.2
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.8e-81 306.6 428 43.7
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 7.3e-77 292.0 363 47.7
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.5e-77 291.6 400 43.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.2e-74 284.6 442 39.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.3e-70 270.4 469 38.8
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.9e-64 250.8 409 39.9
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.0e-62 245.0 179 68.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.3e-62 244.6 224 59.4
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.7e-62 244.2 266 47.0
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.7e-60 236.1 166 63.9
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.9e-54 216.5 300 43.7
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.7e-49 201.1 197 56.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 7.8e-47 192.2 167 57.5
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 3.9e-46 189.9 155 59.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.3e-43 179.5 174 52.9
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 6.4e-41 172.6 175 56.6
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.9e-38 163.3 110 70.9
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 6.0e-31 139.4 96 71.9
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-30 138.3 186 45.2
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.4e-27 128.3 254 36.6
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-22 109.4 143 41.3
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.4e-21 105.9 112 50.9
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 7.1e-16 89.4 65 63.1
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.2e-15 88.6 89 49.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-14 85.5 82 52.4
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 4.3e-13 80.1 62 62.9
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.3e-13 80.1 62 62.9
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.7e-13 79.0 52 69.2
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-11 75.1 108 48.1
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-11 75.1 108 48.1
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 7.7e-10 69.3 400 22.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.8e-09 67.0 161 36.0


User provided reference genes

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