Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 5.9e-37 157.5 93 100.0
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 2.5e-35 152.1 93 97.8
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.4e-14 83.2 57 73.7
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 1.9e-14 82.8 57 71.9
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 1.9e-14 82.8 56 71.4
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.6e-13 79.7 58 70.7
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.6e-13 79.7 58 70.7
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 2.0e-13 79.3 56 73.2
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 2.7e-13 79.0 79 58.2
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 4.6e-13 78.2 57 71.9
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 4.6e-13 78.2 78 59.0
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 6.0e-13 77.8 58 69.0
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 7.8e-13 77.4 49 81.6
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 7.8e-13 77.4 78 57.7
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 7.8e-13 77.4 58 69.0
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 1.0e-12 77.0 76 63.2
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 1.7e-12 76.3 59 71.2
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 2.3e-12 75.9 79 58.2
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 3.0e-12 75.5 55 70.9
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 5.0e-12 74.7 58 69.0
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 6.6e-12 74.3 58 67.2
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 1.1e-11 73.6 58 69.0
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.5e-11 73.2 47 74.5
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.5e-11 73.2 58 67.2
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.9e-11 72.8 57 70.2
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 1.9e-11 72.8 76 56.6
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.9e-11 72.8 58 69.0
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.5e-11 72.4 79 58.2
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 2.5e-11 72.4 58 69.0
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.5e-11 72.4 56 69.6
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.5e-11 72.4 56 69.6
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 3.3e-11 72.0 52 75.0
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 3.3e-11 72.0 95 52.6
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 3.3e-11 72.0 58 65.5
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.6e-11 71.2 59 66.1
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.6e-11 71.2 59 67.8
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 7.3e-11 70.9 81 51.9
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 1.2e-10 70.1 52 71.2
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.2e-10 70.1 57 66.7
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.6e-10 69.7 62 66.1
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 1.6e-10 69.7 59 72.9
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.6e-10 69.7 57 71.9
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.6e-10 69.7 57 71.9
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.6e-10 69.7 57 71.9
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 2.1e-10 69.3 51 70.6
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 2.8e-10 68.9 45 84.4
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 2.8e-10 68.9 56 62.5
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.6e-10 68.6 48 75.0
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 4.7e-10 68.2 51 72.5
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 8.1e-10 67.4 57 61.4
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.1e-09 67.0 46 78.3
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.1e-09 67.0 46 78.3
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 3.1e-09 65.5 63 57.1
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 3.1e-09 65.5 77 55.8
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 4.0e-09 65.1 63 57.1
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 4.0e-09 65.1 51 64.7
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 5.2e-09 64.7 59 61.0
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 1.5e-08 63.2 47 70.2
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 2.6e-08 62.4 51 62.7
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 3.4e-08 62.0 61 57.4
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 3.4e-08 62.0 57 57.9
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 4.4e-08 61.6 59 57.6
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 4.4e-08 61.6 62 53.2
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 7.5e-08 60.8 59 64.4
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 9.9e-08 60.5 63 55.6
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 9.9e-08 60.5 57 61.4
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 1.3e-07 60.1 54 61.1
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 1.7e-07 59.7 51 62.7
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.7e-07 59.7 47 68.1
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 2.2e-07 59.3 58 60.3
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 2.9e-07 58.9 47 66.0
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 2.9e-07 58.9 47 66.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 2.9e-07 58.9 47 66.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 2.9e-07 58.9 47 66.0
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 4.9e-07 58.2 98 49.0
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 4.9e-07 58.2 58 56.9
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 6.4e-07 57.8 46 67.4
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 8.3e-07 57.4 47 66.0
HPP92_009398 Vanilla planifolia HOM05D048504 ORTHO05D009740 4.1e-06 55.1 47 63.8
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 7.1e-06 54.3 51 62.7
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 9.2e-06 53.9 91 44.0


User provided reference genes

Program Settings