Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 3.1e-69 265.0 134 100.0
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 5.0e-27 124.8 87 72.4
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 2.5e-26 122.5 87 72.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 1.6e-25 119.8 87 70.1
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.3e-24 115.9 82 69.5
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 2.0e-23 112.8 82 74.4
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 4.4e-23 111.7 87 63.2
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 4.4e-23 111.7 91 64.8
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 1.3e-22 110.2 87 64.4
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 1.7e-22 109.8 87 60.9
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 2.2e-22 109.4 87 62.1
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 2.9e-22 109.0 92 62.0
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 3.7e-22 108.6 93 63.4
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 6.4e-22 107.8 99 60.6
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 8.3e-22 107.5 99 59.6
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 1.1e-21 107.1 87 62.1
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 1.4e-21 106.7 99 57.6
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 1.9e-21 106.3 87 60.9
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 2.4e-21 105.9 87 59.8
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 2.4e-21 105.9 83 65.1
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 3.2e-21 105.5 87 60.9
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 4.1e-21 105.1 82 63.4
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 5.4e-21 104.8 82 63.4
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 5.4e-21 104.8 87 57.5
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 9.2e-21 104.0 81 66.7
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 1.6e-20 103.2 90 61.1
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 2.1e-20 102.8 90 60.0
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 2.1e-20 102.8 82 64.6
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 2.1e-20 102.8 77 63.6
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 3.5e-20 102.1 87 59.8
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 4.6e-20 101.7 84 63.1
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 4.6e-20 101.7 87 57.5
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 4.6e-20 101.7 92 59.8
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 4.6e-20 101.7 92 59.8
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 6.0e-20 101.3 87 58.6
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 1.0e-19 100.5 83 63.9
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 1.0e-19 100.5 87 58.6
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.0e-19 100.5 94 55.3
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 1.0e-19 100.5 87 56.3
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 1.3e-19 100.1 87 60.9
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.7e-19 99.8 87 57.5
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 2.3e-19 99.4 101 57.4
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 2.3e-19 99.4 83 62.7
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 3.0e-19 99.0 87 57.5
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.0e-19 99.0 87 57.5
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.0e-19 99.0 87 57.5
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 3.0e-19 99.0 87 59.8
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.9e-19 98.6 87 56.3
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 3.9e-19 98.6 82 61.0
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 5.1e-19 98.2 87 57.5
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 6.6e-19 97.8 87 58.6
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 8.6e-19 97.4 84 60.7
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 8.6e-19 97.4 84 60.7
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 8.6e-19 97.4 84 60.7
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 8.6e-19 97.4 83 65.1
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 1.1e-18 97.1 88 60.2
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 1.5e-18 96.7 83 60.2
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.9e-18 96.3 101 56.4
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 2.5e-18 95.9 87 57.5
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 2.5e-18 95.9 87 56.3
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 3.3e-18 95.5 87 57.5
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 5.6e-18 94.7 99 56.6
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 5.6e-18 94.7 87 55.2
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 5.6e-18 94.7 90 56.7
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 7.3e-18 94.4 87 58.6
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 9.5e-18 94.0 87 57.5
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 1.2e-17 93.6 102 52.0
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 1.2e-17 93.6 85 58.8
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 1.2e-17 93.6 85 58.8
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 2.8e-17 92.4 87 55.2
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 1.4e-16 90.1 87 55.2
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.8e-16 89.7 82 59.8
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 2.3e-16 89.4 87 52.9
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 5.2e-16 88.2 88 52.3
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 3.4e-15 85.5 106 48.1
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 5.8e-15 84.7 92 53.3
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 5.8e-15 84.7 81 55.6
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 4.9e-14 81.6 90 50.0
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 8.4e-14 80.9 92 52.2
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 1.4e-13 80.1 87 49.4
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 2.4e-13 79.3 87 49.4
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 1.2e-12 77.0 99 47.5
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 4.3e-10 68.6 94 39.4
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 1.2e-09 67.0 87 42.5
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 4.0e-08 62.0 85 45.9
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 3.4e-07 58.9 56 58.9
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 2.9e-06 55.8 103 38.8


User provided reference genes

Program Settings