Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.5e-159 566.2 299 100.0
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.8e-149 532.7 299 92.0
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 1.9e-146 522.7 299 91.6
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.1e-143 513.5 299 87.6
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.1e-141 506.9 299 89.3
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.8e-141 506.1 307 87.3
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 8.9e-141 503.8 307 87.0
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 1.5e-140 503.1 300 87.0
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.0e-140 502.7 299 86.6
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.0e-140 502.7 299 87.0
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 8.3e-139 497.3 302 86.1
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.1e-138 496.9 301 87.0
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-138 496.5 302 85.4
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-138 496.5 302 85.4
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.9e-138 496.1 302 86.1
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 4.1e-138 495.0 302 85.1
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 7.8e-137 490.7 303 85.1
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 5.1e-136 488.0 300 83.7
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 5.1e-136 488.0 308 83.4
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.5e-135 486.5 301 81.7
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 3.3e-135 485.3 301 82.4
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.3e-135 485.3 299 83.6
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 5.6e-135 484.6 299 85.6
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.6e-135 484.6 303 83.5
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 7.3e-135 484.2 299 81.9
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.5e-135 483.8 294 83.0
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 2.8e-134 482.3 301 81.7
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 6.2e-134 481.1 300 83.7
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.4e-133 479.9 300 83.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 3.1e-133 478.8 293 85.0
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.1e-133 478.8 293 85.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 4.0e-133 478.4 286 86.4
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 4.0e-133 478.4 301 82.7
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 5.2e-133 478.0 306 80.4
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 5.2e-133 478.0 306 80.4
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.5e-132 476.5 312 81.1
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.5e-132 476.5 310 81.9
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.5e-132 476.5 306 80.1
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.0e-132 476.1 303 80.9
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 2.6e-132 475.7 299 81.9
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 7.6e-132 474.2 300 82.3
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.2e-131 472.6 291 83.5
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 2.9e-131 472.2 291 83.5
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.9e-130 469.5 306 80.1
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.2e-129 466.8 294 82.0
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.2e-129 466.8 307 81.1
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.6e-129 466.5 310 77.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.7e-129 465.7 301 80.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 4.6e-129 464.9 304 79.3
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 6.0e-129 464.5 299 80.9
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 7.8e-129 464.2 335 74.0
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.0e-128 462.2 302 81.1
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 5.1e-128 461.5 301 78.7
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 1.1e-127 460.3 299 79.3
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.5e-127 459.9 300 80.3
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.9e-127 459.5 285 83.9
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.9e-127 459.5 301 79.1
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.9e-127 459.5 300 81.3
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.3e-127 458.4 265 88.3
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 5.6e-127 458.0 290 81.7
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 5.6e-127 458.0 289 80.6
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 5.6e-127 458.0 294 78.9
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 7.3e-127 457.6 290 81.7
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 7.3e-127 457.6 294 79.6
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.6e-127 457.2 266 88.0
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.6e-126 456.4 294 79.9
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.6e-126 456.4 299 77.6
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.2e-126 454.5 265 87.5
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.2e-126 454.5 267 87.3
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 8.1e-126 454.1 301 78.7
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.1e-125 453.8 301 78.7
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.1e-125 453.8 301 79.1
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.4e-125 453.4 282 83.3
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 3.1e-125 452.2 299 77.9
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.0e-125 451.8 294 77.9
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 4.0e-125 451.8 294 77.9
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 5.2e-125 451.4 299 77.9
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 6.9e-125 451.1 301 80.7
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 9.0e-125 450.7 327 74.3
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.0e-124 449.5 294 77.6
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 2.6e-124 449.1 294 78.2
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 2.6e-124 449.1 300 78.3
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 3.4e-124 448.7 294 77.9
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 7.6e-124 447.6 294 78.2
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 9.9e-124 447.2 295 77.6
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 4.9e-123 444.9 295 77.3
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 8.4e-123 444.1 293 78.8
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.4e-122 443.4 284 79.6
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.9e-122 443.0 287 79.8
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 5.4e-122 441.4 330 72.4
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 5.4e-122 441.4 276 81.2
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 9.3e-122 440.7 298 76.2
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 9.3e-122 440.7 321 73.5
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 6.0e-121 438.0 289 78.2
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 6.0e-121 438.0 284 78.5
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 7.8e-121 437.6 293 77.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 7.8e-121 437.6 284 78.2
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.3e-120 436.8 289 78.2
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.3e-120 436.8 289 78.2
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.3e-120 436.8 280 79.6
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-120 435.6 266 85.7
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 3.0e-120 435.6 276 80.4
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.9e-120 435.3 299 75.9
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.1e-119 433.7 289 77.9
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 9.6e-119 430.6 299 75.6
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 8.1e-118 427.6 297 75.4
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-117 426.8 284 79.9
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 2.4e-117 426.0 283 77.0
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.4e-117 426.0 281 78.3
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 3.1e-117 425.6 283 77.0
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 4.9e-115 418.3 299 72.6
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 4.9e-115 418.3 289 73.7
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.4e-114 416.0 257 80.9
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.2e-114 415.2 276 77.9
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.4e-114 414.8 265 83.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.5e-113 412.1 308 71.1
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 3.0e-112 409.1 302 73.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.1e-111 407.1 302 72.8
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 7.4e-111 404.4 300 72.7
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.8e-110 402.5 233 86.7
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 3.7e-110 402.1 349 64.8
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.7e-110 402.1 297 70.7
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 6.2e-110 401.4 306 71.9
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 8.1e-110 401.0 294 72.8
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 6.0e-105 384.8 294 68.0
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 2.5e-103 379.4 212 93.4
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 2.1e-102 376.3 291 65.6
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.4e-101 372.9 274 67.9
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.2e-99 366.3 294 64.6
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 9.7e-95 350.9 285 68.4
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 4.5e-92 342.0 286 59.8
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.3e-86 323.9 300 59.7
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.7e-86 322.4 212 77.4
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 4.5e-84 315.5 267 64.0
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.4e-80 303.9 283 54.8
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 5.7e-79 298.5 209 69.9
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.7e-78 295.8 222 68.9
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.3e-77 292.0 198 79.8
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 2.9e-75 286.2 163 89.0
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 4.7e-73 278.9 252 61.5
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.1e-69 267.7 289 51.2
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.7e-65 252.3 163 81.6
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.2e-59 233.4 250 46.8
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 8.3e-46 188.3 178 59.0
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 8.3e-46 188.3 178 59.0
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 3.1e-45 186.4 169 64.5
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 2.6e-39 166.8 107 75.7
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 2.6e-39 166.8 107 75.7
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 2.2e-38 163.7 146 65.1
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 8.0e-33 145.2 95 75.8
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.6e-31 140.2 81 85.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 9.8e-31 138.3 94 73.4
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 1.9e-29 134.0 96 75.0
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.1e-24 118.2 85 65.9
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 2.9e-22 110.2 99 64.6
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 8.6e-19 98.6 79 62.0
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.5e-18 97.8 79 63.3
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 6.2e-17 92.4 79 63.3
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.4e-16 91.3 58 81.0
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 2.4e-16 90.5 87 54.0
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-15 87.8 82 57.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.4e-15 86.3 52 88.5
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.9e-13 80.9 70 70.0
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.4e-13 80.5 59 64.4
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 3.2e-13 80.1 113 40.7
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 4.2e-13 79.7 68 61.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.6e-12 77.8 68 61.8
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 4.8e-09 66.2 173 34.7
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 2.4e-08 63.9 39 76.9
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 2.4e-08 63.9 39 76.9


User provided reference genes

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