Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007683 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-47 190.7 97 100.0
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-37 158.7 96 87.5
CSS0001687 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-34 147.9 97 82.5
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.5e-15 85.5 67 64.2
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.5e-15 84.3 71 57.7
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.1e-15 84.0 83 50.6
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-13 80.1 83 53.0
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.9e-13 78.2 79 54.4
CSS0045870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-13 77.4 79 54.4
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 1.9e-12 75.9 64 54.7
CSS0007773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-12 73.9 66 57.6
CSS0003386 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-11 73.2 63 58.7
HanXRQChr07g0202651 Helianthus annuus HOM05D000002 ORTHO05D000001 5.3e-10 67.8 79 46.8
HanXRQChr11g0320201 Helianthus annuus HOM05D000002 ORTHO05D000001 5.9e-09 64.3 79 43.0
HanXRQChr10g0315391 Helianthus annuus HOM05D000002 ORTHO05D000001 1.3e-08 63.2 78 44.9
RcHm_v2.0_Chr2g0117741 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 61.2 77 46.8
TAR607G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.5e-08 60.8 70 44.3
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 1.1e-07 60.1 72 45.8
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 1.1e-07 60.1 96 37.5
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 4.2e-07 58.2 49 51.0
HanXRQChr17g0541461 Helianthus annuus HOM05D000002 ORTHO05D000001 7.2e-07 57.4 75 40.0
Oeu059914.1 Olea europaea HOM05D000002 ORTHO05D000001 7.2e-07 57.4 60 46.7
HanXRQChr01g0008001 Helianthus annuus HOM05D000002 ORTHO05D000001 9.3e-07 57.0 67 40.3
Oeu018031.1 Olea europaea HOM05D000002 ORTHO05D000001 9.3e-07 57.0 60 46.7
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 9.3e-07 57.0 60 46.7
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-06 56.6 53 49.1
Oeu005617.1 Olea europaea HOM05D000002 ORTHO05D000001 1.2e-06 56.6 60 46.7
Oeu012960.1 Olea europaea HOM05D000002 ORTHO05D000001 1.2e-06 56.6 60 46.7
QL02p077346 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-06 56.6 90 41.1
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-06 56.2 86 41.9
Atru.chr3.1003 Acer truncatum HOM05D000002 ORTHO05D000001 2.1e-06 55.8 51 49.0
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 80 42.5
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 80 42.5
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-06 55.5 80 42.5
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 2.7e-06 55.5 83 38.6
HanXRQChr09g0251421 Helianthus annuus HOM05D000530 ORTHO05D003341 2.7e-06 55.5 72 44.4
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.7e-06 55.5 93 36.6
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.7e-06 55.5 90 44.4
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.6e-06 55.1 85 37.6
Atru.chr4.967 Acer truncatum HOM05D000002 ORTHO05D000001 4.6e-06 54.7 61 44.3
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.6e-06 54.7 77 40.3
ECA246G3670 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.6e-06 54.7 67 40.3
Oeu019477.1 Olea europaea HOM05D000002 ORTHO05D000001 4.6e-06 54.7 60 46.7
Dinv05898 Davidia involucrata HOM05D013570 ORTHO05D000001 6.1e-06 54.3 85 37.6
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 6.1e-06 54.3 78 39.7
HanXRQChr16g0523581 Helianthus annuus HOM05D000002 ORTHO05D000001 7.9e-06 53.9 71 42.3


User provided reference genes

Program Settings