Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 0.0e+00 1460.3 719 100.0
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 0.0e+00 1152.1 718 80.1
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 0.0e+00 1107.0 720 77.2
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.5e-308 1061.2 671 78.7
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.5e-298 1029.2 723 70.8
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.3e-296 1021.9 749 71.0
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.5e-295 1019.2 671 76.5
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.8e-270 934.9 742 67.4
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 4.0e-264 914.8 714 65.1
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 6.0e-260 901.0 712 64.3
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.4e-256 889.0 718 62.8
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.5e-246 854.4 421 100.0
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 1.4e-245 853.2 723 58.2
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 4.2e-245 851.7 727 61.5
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 7.1e-245 850.9 710 62.4
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 2.2e-241 839.3 721 58.1
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 1.8e-240 836.3 710 59.7
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 2.4e-240 835.9 711 60.3
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 9.0e-240 833.9 723 58.4
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 7.7e-239 830.9 722 59.7
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.0e-238 830.5 722 60.4
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 3.8e-238 828.6 720 57.6
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 2.7e-236 822.4 714 57.7
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.6e-236 822.0 714 58.8
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.4e-235 820.1 711 59.1
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.1e-234 817.0 722 59.3
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 2.5e-234 815.8 735 58.5
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 3.3e-234 815.5 678 60.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 5.7e-234 814.7 723 59.3
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 1.1e-232 810.4 716 58.8
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 6.9e-232 807.7 725 58.9
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.5e-231 806.6 687 60.4
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 1.7e-230 803.1 711 58.5
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 5.0e-230 801.6 720 57.8
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 5.0e-230 801.6 711 58.5
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 8.5e-230 800.8 725 58.6
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.4e-229 800.0 725 58.8
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.2e-229 798.9 718 58.9
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.7e-228 795.8 714 58.1
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.8e-227 793.1 738 57.2
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 6.7e-227 791.2 706 56.4
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.3e-225 786.9 680 60.3
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.7e-225 786.6 721 54.8
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 2.0e-223 779.6 707 57.7
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.5e-223 778.9 652 61.7
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.6e-220 770.0 711 58.1
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.6e-220 768.8 719 56.2
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.4e-219 766.9 720 55.8
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.5e-218 763.5 707 57.3
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.7e-217 760.0 668 59.7
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.2e-215 753.8 764 53.1
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 1.7e-214 750.0 685 56.2
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.1e-212 743.0 715 54.7
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 3.0e-211 739.2 711 55.1
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 3.0e-211 739.2 711 54.0
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 2.0e-210 736.5 691 56.9
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 4.4e-210 735.3 705 56.9
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 6.3e-209 731.5 715 54.1
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.4e-208 729.6 719 55.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 3.1e-208 729.2 715 54.5
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 7.0e-208 728.0 753 52.2
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 9.1e-208 727.6 643 59.7
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.5e-205 720.3 713 52.3
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.9e-205 719.9 723 51.6
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 2.5e-205 719.5 724 55.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 5.5e-205 718.4 722 54.0
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.8e-203 713.4 735 53.2
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.1e-200 701.0 705 54.9
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 5.9e-199 698.4 715 51.9
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 6.6e-198 694.9 726 51.7
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 6.6e-198 694.9 721 51.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.0e-195 687.6 721 50.1
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 3.0e-195 686.0 670 52.5
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.7e-193 680.2 723 50.2
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 6.3e-193 678.3 713 51.5
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.3e-189 666.0 716 51.1
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.6e-189 665.2 716 50.1
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 3.6e-188 662.5 713 49.9
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.0e-187 661.0 709 50.1
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 6.4e-185 651.7 714 50.8
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.9e-184 650.2 743 48.3
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.0e-183 646.7 713 49.6
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.3e-182 643.3 721 49.1
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.9e-181 640.2 732 47.4
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 9.5e-181 637.9 720 49.4
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 5.2e-179 632.1 723 48.8
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 6.8e-179 631.7 691 50.9
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.7e-177 625.9 486 68.3
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.1e-175 620.2 680 49.7
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 6.6e-174 615.1 698 47.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 4.3e-173 612.5 668 47.5
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.0e-170 603.6 664 50.2
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 4.1e-168 595.9 716 47.6
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.0e-166 591.3 763 45.7
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.3e-166 590.9 689 46.6
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 8.9e-163 578.2 669 48.9
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 5.4e-152 542.3 507 56.0
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.5e-149 534.3 720 42.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 5.6e-149 532.3 589 49.4
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 2.2e-145 520.4 519 53.8
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 6.4e-145 518.8 518 53.7
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 3.5e-143 513.1 542 51.8
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 5.6e-141 505.8 764 39.9
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 8.1e-140 501.9 784 39.0
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.8e-139 500.7 726 39.9
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.9e-133 480.7 640 42.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 3.8e-129 466.5 706 38.4
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.1e-128 464.9 762 39.2
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.4e-120 435.3 497 50.1
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.2e-119 434.9 819 36.3
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.6e-111 407.9 282 70.2
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 6.1e-111 406.0 386 54.1
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 2.4e-107 394.0 657 38.2
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.2e-103 381.7 264 68.9
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 3.1e-91 340.5 299 56.9
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.1e-83 313.9 348 48.0
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 4.5e-82 310.1 203 67.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 5.6e-72 276.6 343 46.4
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 9.8e-69 265.8 300 45.0
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.0e-65 253.4 117 100.0
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.5e-58 230.7 310 43.5
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.7e-41 175.3 87 98.9
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.5e-32 145.6 107 67.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 5.8e-29 133.7 158 45.6
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.7e-23 114.4 152 46.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 8.1e-23 113.2 144 44.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 8.1e-23 113.2 174 43.7
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 2.4e-22 111.7 136 47.8
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.1e-22 111.3 132 45.5
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 2.4e-14 85.1 75 54.7
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.2e-10 72.8 59 64.4
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 5.1e-09 67.4 68 47.1
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 3.7e-07 61.2 97 37.1
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.4e-06 59.3 125 29.6
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 9.1e-06 56.6 41 58.5


User provided reference genes

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