Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.3e-60 236.1 113 100.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.3e-60 236.1 113 100.0
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.2e-52 208.8 111 87.4
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 8.5e-52 206.8 106 91.5
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 1.5e-51 206.1 106 90.6
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.5e-51 205.3 106 91.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 3.2e-51 204.9 106 90.6
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.2e-50 203.0 106 89.6
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.2e-50 203.0 106 88.7
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.6e-50 202.6 106 88.7
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 2.7e-50 201.8 106 88.7
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 3.6e-50 201.4 106 89.6
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 6.1e-50 200.7 106 89.6
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.0e-50 200.3 108 86.1
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.3e-49 198.7 107 86.9
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.3e-49 198.7 109 86.2
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.3e-49 198.7 106 86.8
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 2.3e-49 198.7 104 90.4
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 2.3e-49 198.7 106 87.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 2.3e-49 198.7 104 90.4
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 3.0e-49 198.4 106 87.7
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 4.0e-49 198.0 106 87.7
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.2e-49 197.6 106 85.8
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 5.2e-49 197.6 106 86.8
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 5.2e-49 197.6 106 85.8
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 8.8e-49 196.8 106 86.8
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.2e-48 196.4 106 84.9
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 1.5e-48 196.1 107 86.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.5e-48 196.1 109 88.1
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.5e-48 196.1 105 87.6
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 2.0e-48 195.7 106 87.7
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 2.6e-48 195.3 107 84.1
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 3.3e-48 194.9 105 85.7
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.3e-48 194.9 105 86.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 4.4e-48 194.5 105 85.7
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 5.7e-48 194.1 106 86.8
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 9.7e-48 193.4 106 85.8
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 1.3e-47 193.0 106 85.8
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.7e-47 192.6 106 84.0
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 1.7e-47 192.6 106 84.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 2.8e-47 191.8 104 86.5
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 3.7e-47 191.4 106 83.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 3.7e-47 191.4 106 84.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 4.8e-47 191.0 103 85.4
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 4.8e-47 191.0 106 83.0
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 4.8e-47 191.0 106 83.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 4.8e-47 191.0 105 84.8
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 4.8e-47 191.0 106 83.0
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 6.3e-47 190.7 105 84.8
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 6.3e-47 190.7 106 83.0
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 6.3e-47 190.7 106 84.0
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.1e-46 189.9 105 82.9
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-46 189.9 105 82.9
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-46 189.9 105 82.9
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.9
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.0
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.0
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.0
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.0
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.9
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 83.0
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.4e-46 189.5 106 84.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.8e-46 189.1 106 83.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 5.3e-46 187.6 106 82.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 7.0e-46 187.2 106 82.1
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 9.1e-46 186.8 106 83.0
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.2e-45 186.4 106 83.0
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.2e-45 186.4 107 82.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 2.0e-45 185.7 106 83.0
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 2.0e-45 185.7 106 83.0
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 2.0e-45 185.7 106 81.1
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 2.7e-45 185.3 104 79.8
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 1.0e-44 183.3 106 77.4
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.0e-44 183.3 100 85.0
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.3e-44 183.0 106 77.4
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.3e-44 183.0 106 80.2
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 1.7e-44 182.6 107 75.7
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.7e-44 182.6 107 80.4
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.2e-44 182.2 104 82.7
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 3.8e-44 181.4 106 76.4
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 3.8e-44 181.4 104 80.8
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 5.0e-44 181.0 104 83.7
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 5.0e-44 181.0 109 73.4
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 6.5e-44 180.6 105 76.2
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 6.5e-44 180.6 106 76.4
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 6.5e-44 180.6 105 81.0
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 6.5e-44 180.6 106 81.1
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 6.5e-44 180.6 106 81.1
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 8.5e-44 180.3 106 74.5
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 8.5e-44 180.3 105 81.0
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.1e-43 179.9 106 74.5
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.1e-43 179.9 107 75.7
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.1e-43 179.9 106 75.5
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 1.9e-43 179.1 88 94.3
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-43 179.1 105 79.0
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 2.5e-43 178.7 104 76.0
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.5e-43 178.7 106 80.2
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.5e-43 178.7 106 80.2
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 4.2e-43 177.9 106 75.5
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 4.2e-43 177.9 105 78.1
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 5.5e-43 177.6 105 80.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 5.5e-43 177.6 114 76.3
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 7.2e-43 177.2 106 74.5
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.2e-42 176.4 105 79.0
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.2e-42 176.4 106 74.5
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.6e-42 176.0 100 82.0
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.6e-42 176.0 104 76.9
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 2.7e-42 175.3 104 76.0
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.7e-42 175.3 106 76.4
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.7e-42 175.3 106 76.4
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 8.0e-42 173.7 106 78.3
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 5.7e-40 167.5 107 72.0
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 5.7e-40 167.5 107 72.0
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 5.7e-40 167.5 107 72.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.7e-39 164.9 105 74.3
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.7e-39 164.9 104 74.0
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 8.3e-39 163.7 114 67.5
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 8.3e-39 163.7 106 72.6
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 2.7e-37 158.7 106 71.7
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 2.5e-35 152.1 99 72.7
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 1.4e-33 146.4 103 71.8
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.8e-33 146.0 107 66.4
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.9e-31 137.9 69 89.9
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 8.3e-31 137.1 67 91.0
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.5e-27 126.3 95 62.1
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-27 125.9 70 80.0
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 8.9e-25 117.1 97 52.6
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.3e-23 113.2 98 54.1
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 7.0e-22 107.5 68 77.9
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.8e-21 104.0 106 49.1
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 7.8e-21 104.0 69 73.9
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 9.5e-19 97.1 57 80.7
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 1.8e-17 92.8 77 55.8
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.3e-15 86.7 52 67.3
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.6e-13 79.7 43 74.4
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.6e-10 69.7 42 78.6
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 1.1e-06 57.0 29 82.8


User provided reference genes

Program Settings