Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 4.2e-133 479.2 321 100.0
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.1e-67 261.9 299 73.2
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 6.8e-67 259.2 303 73.6
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.3e-57 228.4 301 67.4
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 6.4e-57 226.1 301 68.4
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 5.8e-50 203.0 296 66.2
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 5.4e-48 196.4 293 64.8
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 1.2e-47 195.3 300 63.0
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 7.8e-47 192.6 298 62.4
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.1e-45 188.7 259 69.9
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 3.3e-45 187.2 290 64.5
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 7.3e-45 186.0 251 71.3
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 6.2e-44 183.0 295 61.7
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 8.1e-44 182.6 293 64.2
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 2.4e-43 181.0 299 62.5
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 4.0e-43 180.3 250 72.0
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 1.5e-42 178.3 251 66.5
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.6e-42 177.6 294 62.6
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 2.6e-42 177.6 293 62.8
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 7.6e-42 176.0 300 57.7
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 9.9e-42 175.6 300 60.0
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 3.8e-41 173.7 301 57.8
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 4.9e-41 173.3 300 60.0
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 6.4e-41 172.9 295 60.3
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 2.4e-40 171.0 244 68.9
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.4e-40 171.0 244 68.4
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 5.4e-40 169.9 293 60.8
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 6.6e-38 162.9 302 60.6
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 8.7e-38 162.5 83 94.0
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.9e-37 161.4 279 59.9
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 2.1e-36 157.9 305 59.3
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 2.1e-36 157.9 279 62.0
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 2.4e-35 154.5 254 65.4
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 3.1e-35 154.1 296 58.8
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 4.0e-35 153.7 282 61.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 4.0e-35 153.7 255 63.1
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 5.3e-35 153.3 212 75.9
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 2.0e-34 151.4 238 66.8
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 4.5e-34 150.2 282 60.3
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 2.9e-33 147.5 263 53.2
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 8.4e-33 146.0 247 64.0
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 1.1e-32 145.6 209 74.6
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 1.4e-32 145.2 290 57.2
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.4e-32 144.4 243 58.0
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 4.2e-32 143.7 257 47.9
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 4.2e-32 143.7 295 57.3
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 9.3e-32 142.5 243 65.0
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.2e-31 142.1 229 60.3
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 2.7e-31 141.0 298 55.4
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.5e-31 140.6 296 56.8
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 7.9e-31 139.4 251 57.8
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 3.0e-30 137.5 247 63.2
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 5.1e-30 136.7 282 58.5
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 8.7e-30 136.0 257 61.1
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 3.3e-29 134.0 281 58.7
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 3.3e-29 134.0 247 56.7
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 5.6e-29 133.3 276 58.7
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 9.6e-29 132.5 240 63.3
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 9.6e-29 132.5 280 58.6
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 1.3e-28 132.1 293 47.1
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.6e-28 131.7 246 61.0
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 3.1e-27 127.5 311 44.1
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 2.6e-26 124.4 148 48.0
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 3.4e-26 124.0 191 72.3
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 1.0e-25 122.5 275 54.9
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 1.4e-24 118.6 222 66.7
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 2.5e-24 117.9 207 70.5
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 6.0e-23 113.2 290 52.4
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 6.0e-23 113.2 192 60.4
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 7.9e-23 112.8 287 56.1
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 1.0e-22 112.5 274 55.5
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 1.3e-22 112.1 240 61.2
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 3.0e-22 110.9 240 61.7
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 3.9e-22 110.5 229 62.9
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.9e-21 108.2 269 56.1
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 5.7e-21 106.7 240 60.8
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 7.4e-21 106.3 272 55.5
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.6e-20 105.1 124 46.8
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 4.8e-20 103.6 269 55.4
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 6.3e-20 103.2 240 60.0
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.4e-19 102.1 237 60.8
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 4.1e-19 100.5 242 49.6
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 9.0e-19 99.4 117 47.0
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 2.6e-18 97.8 108 48.1
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 3.4e-18 97.4 112 46.4
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 1.0e-17 95.9 224 62.1
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.3e-17 95.5 237 49.8
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 2.9e-17 94.4 76 60.5
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 1.9e-16 91.7 107 46.7
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 2.5e-16 91.3 117 43.6
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 1.4e-11 75.5 74 54.1
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 3.1e-11 74.3 104 43.3
Ah.03g139350 Amaranthus hybridus HOM05D000891 ORTHO05D000761 8.5e-09 66.2 127 31.5
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 8.5e-09 66.2 106 35.8
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 8.5e-09 66.2 99 34.3
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 3.2e-08 64.3 120 31.7
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 4.2e-08 63.9 120 31.7
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 4.2e-08 63.9 120 31.7
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 2.1e-07 61.6 132 34.1
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 2.1e-07 61.6 129 31.0
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 3.6e-07 60.8 93 36.6
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 3.6e-07 60.8 93 36.6
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 4.6e-07 60.5 129 31.0
Sc07g0000240 Simmondsia chinensis HOM05D000891 ORTHO05D000761 6.1e-07 60.1 116 31.9
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 7.9e-07 59.7 121 28.1
CsaV3_4G005170 Cucumis sativus L. HOM05D000891 ORTHO05D000761 7.9e-07 59.7 123 27.6
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 1.0e-06 59.3 120 30.8
QL06p045511 Quercus lobata HOM05D000891 ORTHO05D000761 1.0e-06 59.3 116 30.2
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 1.4e-06 58.9 129 31.0
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 3.0e-06 57.8 120 27.5
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 3.0e-06 57.8 112 31.2
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 3.9e-06 57.4 120 26.7
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 5.1e-06 57.0 119 28.6
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.1e-06 57.0 156 29.5
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 6.7e-06 56.6 99 31.3
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.7e-06 56.6 156 28.2
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 8.8e-06 56.2 129 27.1
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 8.8e-06 56.2 120 30.8
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 8.8e-06 56.2 116 27.6


User provided reference genes

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