Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 2.0e-49 198.7 96 100.0
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.0e-21 106.7 109 57.8
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.3e-21 106.3 100 61.0
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.4e-18 96.3 117 50.4
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.8e-18 95.9 95 49.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 3.1e-18 95.1 96 56.2
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 5.2e-18 94.4 99 53.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 8.9e-18 93.6 109 51.4
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.5e-17 92.8 106 55.7
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.0e-17 92.4 103 50.5
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.6e-17 92.0 95 55.8
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-17 92.0 104 49.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.6e-17 92.0 108 52.8
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.4e-17 91.3 113 51.3
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.6e-17 90.5 104 51.9
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 9.9e-17 90.1 115 52.2
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 9.9e-17 90.1 103 50.5
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.3e-16 89.7 104 51.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.7e-16 89.4 67 71.6
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.2e-16 89.0 114 50.9
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.9e-16 88.6 117 48.7
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.9e-16 88.6 107 51.4
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 3.7e-16 88.2 107 51.4
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 4.9e-16 87.8 113 46.9
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 4.9e-16 87.8 106 49.1
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.1e-15 86.7 118 50.0
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 2.4e-15 85.5 114 50.0
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.4e-15 85.5 121 47.1
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.4e-15 85.5 114 48.2
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 5.4e-15 84.3 114 45.6
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 5.4e-15 84.3 114 45.6
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.4e-15 84.3 113 47.8
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.1e-15 84.0 115 48.7
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 9.2e-15 83.6 128 45.3
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.2e-14 83.2 126 43.7
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.2e-14 83.2 106 51.9
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.6e-14 82.8 115 47.0
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.1e-14 82.4 116 46.6
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.7e-14 82.0 112 47.3
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.5e-14 81.6 112 46.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 4.6e-14 81.3 112 48.2
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.6e-14 81.3 111 46.8
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 4.6e-14 81.3 113 46.0
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.6e-14 81.3 109 48.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 7.8e-14 80.5 113 46.0
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.0e-13 80.1 114 43.9
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.0e-13 80.1 112 42.9
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.3e-13 79.7 93 47.3
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.7e-13 79.3 106 48.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-13 79.3 113 49.6
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.7e-13 79.3 118 43.2
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.7e-13 79.3 100 49.0
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.3e-13 79.0 101 48.5
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.3e-13 79.0 93 50.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.9e-13 78.2 111 47.7
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 3.9e-13 78.2 111 44.1
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 3.9e-13 78.2 105 41.0
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 5.1e-13 77.8 105 45.7
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 5.1e-13 77.8 115 46.1
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.6e-13 77.4 111 45.0
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.1e-12 76.6 98 45.9
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-12 76.6 117 43.6
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.1e-12 76.6 118 44.1
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.5e-12 76.3 108 47.2
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 1.5e-12 76.3 101 48.5
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.5e-12 76.3 84 48.8
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-12 76.3 113 48.7
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.5e-12 76.3 117 43.6
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.9e-12 75.9 106 46.2
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.5e-12 75.5 104 47.1
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 2.5e-12 75.5 115 44.3
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.5e-12 75.5 114 47.4
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.5e-12 75.5 118 43.2
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.3e-12 75.1 112 45.5
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.3e-12 75.1 69 53.6
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.3e-12 75.1 113 47.8
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.3e-12 75.1 121 41.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 4.3e-12 74.7 102 46.1
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 4.3e-12 74.7 102 46.1
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.3e-12 74.7 106 46.2
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.3e-12 74.7 112 42.0
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 4.3e-12 74.7 134 40.3
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 5.6e-12 74.3 108 44.4
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 5.6e-12 74.3 105 45.7
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 5.6e-12 74.3 75 52.0
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 7.3e-12 73.9 61 60.7
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.3e-12 73.9 129 44.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 7.3e-12 73.9 105 44.8
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 7.3e-12 73.9 94 50.0
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.6e-12 73.6 117 42.7
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 9.6e-12 73.6 117 44.4
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.6e-11 72.8 118 44.9
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.6e-11 72.8 114 43.9
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.1e-11 72.4 119 41.2
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.6e-11 71.6 115 41.7
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 3.6e-11 71.6 119 42.9
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 3.6e-11 71.6 96 42.7
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.7e-11 71.2 88 47.7
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 4.7e-11 71.2 113 42.5
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 6.2e-11 70.9 62 59.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 6.2e-11 70.9 120 40.8
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 8.1e-11 70.5 109 46.8
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.1e-11 70.5 109 46.8
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.1e-11 70.5 109 47.7
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 8.1e-11 70.5 111 42.3
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.1e-10 70.1 109 45.0
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.1e-10 70.1 111 43.2
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.4e-10 69.7 62 62.9
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.4e-10 69.7 119 41.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.4e-10 69.7 113 42.5
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.4e-10 68.9 104 46.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.4e-10 68.9 110 44.5
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 3.1e-10 68.6 118 41.5
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 4.0e-10 68.2 66 59.1
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 4.0e-10 68.2 117 42.7
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 5.2e-10 67.8 108 42.6
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 8.9e-10 67.0 104 40.4
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-09 66.6 115 40.9
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-09 66.6 89 47.2
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.6e-09 65.5 96 42.7
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 2.6e-09 65.5 106 44.3
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 3.4e-09 65.1 107 46.7
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 1.3e-08 63.2 123 37.4
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 2.2e-08 62.4 107 40.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.2e-08 62.4 73 47.9
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.9e-08 62.0 107 39.3
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 8.4e-08 60.5 108 40.7
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 4.2e-07 58.2 70 48.6
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 4.2e-07 58.2 50 50.0
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.2e-06 56.6 97 44.3
Thhalv10012120m.g Eutrema salsugineum HOM05D012335 ORTHO05D014421 1.6e-06 56.2 93 39.8
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 6.0e-06 54.3 67 49.3


User provided reference genes

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