Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.9e-234 815.5 402 100.0
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 91.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 90.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.3
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 89.1
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.6
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 89.1
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 89.6
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 89.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 89.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.1
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.1
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 89.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 89.1
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 89.6
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.1
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 89.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.6
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.1
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 88.1
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 88.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 88.6
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.6
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 88.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 89.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.6e-209 732.6 401 87.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 88.1
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 87.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 86.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 87.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 87.8
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.6
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.5e-207 725.3 416 84.9
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 87.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.3e-207 724.5 416 84.9
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 87.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 87.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 85.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 86.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 4.8e-206 721.1 402 86.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 4.8e-206 721.1 402 86.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 4.8e-206 721.1 402 86.3
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 86.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 86.1
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 86.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.1e-205 719.9 402 86.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.4e-205 719.5 402 86.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 86.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 86.6
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 85.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 86.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 86.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 86.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 9.0e-205 716.8 402 85.6
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 9.0e-205 716.8 402 85.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 85.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 85.6
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 85.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 85.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 84.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.7e-203 712.6 411 84.7
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 84.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 85.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 6.5e-203 710.7 402 85.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.4e-203 710.3 400 85.5
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 85.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 84.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.9e-202 709.1 402 85.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.5e-202 708.8 417 82.7
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.5e-202 708.8 402 85.3
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.5e-202 707.6 402 85.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 9.3e-202 706.8 402 85.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.1e-201 705.7 402 84.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 7.9e-201 703.7 402 84.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.0e-200 703.4 438 79.0
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-200 703.0 402 84.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 83.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 8.7e-200 700.3 402 83.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 8.7e-200 700.3 441 79.4
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 9.6e-199 696.8 429 80.7
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.3e-198 694.1 401 83.3
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 9.0e-197 690.3 402 83.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.4e-196 688.3 402 84.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.3e-195 686.4 419 82.3
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 2.1e-193 679.1 402 81.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-193 677.2 402 80.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 7.9e-193 677.2 402 80.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 79.9
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 3.3e-191 671.8 375 86.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 5.7e-191 671.0 402 81.6
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.7e-191 670.2 402 79.9
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.5e-188 662.9 402 81.1
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 4.2e-186 654.8 357 87.7
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.2e-182 642.5 361 86.4
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.6e-177 625.2 360 82.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 3.1e-173 612.1 402 76.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.6e-172 609.8 334 89.2
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 4.5e-172 608.2 340 86.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 9.4e-170 600.5 402 70.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.7e-169 599.0 396 71.0
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 8.0e-169 597.4 402 70.4
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.6e-167 592.4 402 69.4
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.4e-165 585.9 403 68.7
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-164 583.6 403 69.0
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.7e-163 579.7 402 72.6
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.7e-159 564.7 399 66.4
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.7e-159 564.7 403 67.2
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.7e-158 562.0 402 66.7
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 6.3e-150 534.6 289 90.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 3.8e-147 525.4 403 69.0
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.3e-136 489.6 402 64.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 2.9e-134 482.6 419 61.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 4.6e-124 448.7 259 82.2
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.1e-120 436.0 398 52.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.2e-113 414.1 399 52.1
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 2.7e-108 396.4 276 71.7
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.2e-102 376.7 229 79.5
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.2e-101 372.5 219 80.8
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 7.1e-101 371.7 219 80.8
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.7e-100 369.8 219 79.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-82 310.8 300 55.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.8e-78 296.2 158 90.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.1e-76 290.4 167 83.8
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 5.5e-53 212.6 116 87.9
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.3e-30 137.5 351 26.2
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.8e-30 136.7 348 28.7
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.5e-29 134.8 86 75.6
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.7e-17 93.6 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.2e-12 78.6 45 77.8
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-11 75.1 318 22.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.6e-10 70.9 72 54.2


User provided reference genes

Program Settings