Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007587 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.9e-83 312.4 150 100.0
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 8.4e-47 190.7 105 88.6
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 8.4e-47 190.7 105 88.6
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 3.2e-46 188.7 96 95.8
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.6e-45 184.9 96 93.8
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.3e-44 183.3 96 91.7
CSS0046659 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 6.6e-44 181.0 98 88.8
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 2.1e-42 176.0 105 81.0
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.4e-41 172.6 89 93.3
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 4.0e-41 171.8 104 80.8
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 5.3e-41 171.4 104 78.8
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 5.3e-41 171.4 104 78.8
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 5.3e-41 171.4 107 75.7
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 1.2e-40 170.2 101 80.2
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 2.6e-40 169.1 104 76.9
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 7.6e-40 167.5 118 69.5
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 2.9e-39 165.6 104 74.0
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 3.8e-39 165.2 105 75.2
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 3.8e-39 165.2 104 76.0
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 4.9e-39 164.9 105 73.3
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 4.9e-39 164.9 104 73.1
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 8.4e-39 164.1 105 71.4
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 8.4e-39 164.1 104 75.0
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 8.4e-39 164.1 104 75.0
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 1.1e-38 163.7 104 73.1
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 1.1e-38 163.7 108 70.4
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 1.4e-38 163.3 104 73.1
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 1.9e-38 162.9 101 75.2
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 3.2e-38 162.2 105 74.3
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 3.2e-38 162.2 105 71.4
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 3.2e-38 162.2 105 75.2
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 3.2e-38 162.2 104 74.0
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 4.2e-38 161.8 104 75.0
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 4.2e-38 161.8 101 75.2
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 5.4e-38 161.4 104 72.1
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 9.3e-38 160.6 101 75.2
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 1.2e-37 160.2 104 73.1
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 1.6e-37 159.8 101 72.3
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 1.6e-37 159.8 101 73.3
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 2.1e-37 159.5 104 72.1
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 2.1e-37 159.5 105 72.4
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 2.1e-37 159.5 107 69.2
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 2.1e-37 159.5 97 77.3
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 3.5e-37 158.7 97 76.3
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 4.6e-37 158.3 108 69.4
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 4.6e-37 158.3 105 71.4
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 6.0e-37 157.9 105 70.5
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.3e-36 156.8 101 72.3
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 1.3e-36 156.8 101 70.3
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 1.3e-36 156.8 105 76.2
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 1.8e-36 156.4 104 71.2
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 1.8e-36 156.4 105 69.5
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 1.8e-36 156.4 105 70.5
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 2.3e-36 156.0 104 71.2
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 2.3e-36 156.0 104 71.2
CDE06G2285 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 3.9e-36 155.2 107 71.0
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 3.9e-36 155.2 105 70.5
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 3.9e-36 155.2 105 68.6
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 3.9e-36 155.2 107 69.2
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 3.9e-36 155.2 107 69.2
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 5.1e-36 154.8 101 71.3
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 6.7e-36 154.5 105 68.6
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 6.7e-36 154.5 105 68.6
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 8.7e-36 154.1 105 67.6
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 1.1e-35 153.7 101 71.3
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 1.1e-35 153.7 105 67.6
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 1.5e-35 153.3 104 70.2
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 1.5e-35 153.3 122 65.6
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 1.9e-35 152.9 105 67.6
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.9e-35 152.9 104 69.2
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 2.5e-35 152.5 97 74.2
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 2.5e-35 152.5 105 67.6
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 3.3e-35 152.1 105 69.5
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 3.3e-35 152.1 97 75.3
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 5.6e-35 151.4 105 67.6
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 5.6e-35 151.4 105 69.5
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 9.6e-35 150.6 104 67.3
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 9.6e-35 150.6 101 71.3
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 1.6e-34 149.8 105 66.7
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 2.8e-34 149.1 105 64.8
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 2.8e-34 149.1 105 64.8
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 3.7e-34 148.7 105 67.6
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 6.2e-34 147.9 105 66.7
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 8.1e-34 147.5 105 63.8
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 1.4e-33 146.7 108 67.6
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 1.4e-33 146.7 96 74.0
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 2.4e-33 146.0 108 67.6
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 2.4e-33 146.0 105 65.7
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 2.4e-33 146.0 97 70.1
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 3.1e-33 145.6 108 65.7
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 4.0e-33 145.2 108 65.7
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 5.3e-33 144.8 105 64.8
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 6.9e-33 144.4 108 65.7
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 6.9e-33 144.4 108 65.7
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 1.2e-32 143.7 105 62.9
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 1.5e-32 143.3 105 64.8
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 1.5e-32 143.3 108 66.7
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 1.5e-32 143.3 101 67.3
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 2.0e-32 142.9 105 65.7
SEGI_20344 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 2.0e-32 142.9 101 64.4
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 66.7
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 2.6e-32 142.5 108 65.7
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 9.9e-32 140.6 101 64.4
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 2.2e-31 139.4 104 62.5
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 2.2e-31 139.4 105 66.7
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 1.4e-30 136.7 95 68.4
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 7.1e-30 134.4 95 69.5
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 9.3e-30 134.0 94 66.0
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 1.8e-25 119.8 105 60.0
MBI03_g43429_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 1.2e-24 117.1 101 55.4
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 1.0e-23 114.0 101 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 2.9e-23 112.5 104 52.9
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 1.8e-20 103.2 110 49.1
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 6.7e-20 101.3 101 47.5
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 8.2e-18 94.4 104 50.0
CBR_g20107 Chara braunii HOM05D005091 ORTHO05D006047 2.4e-17 92.8 95 49.5
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 2.6e-16 89.4 97 54.6
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 3.8e-15 85.5 58 69.0
TAR381G0878 Trochodendron aralioides HOM05D005091 ORTHO05D006047 7.9e-13 77.8 57 71.9
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 2.3e-12 76.3 41 82.9
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 8.8e-12 74.3 37 89.2


User provided reference genes

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