Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.7e-214 748.4 383 100.0
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.3e-196 688.0 356 98.6
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 2.6e-129 466.1 370 68.6
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 4.8e-123 445.3 401 63.8
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 3.6e-118 429.1 428 56.8
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 4.2e-111 405.6 387 59.2
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.4e-106 390.6 381 59.6
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.0e-105 386.7 317 64.4
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 7.7e-105 384.8 381 59.8
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 6.5e-104 381.7 395 57.5
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 6.5e-104 381.7 395 57.5
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 8.5e-104 381.3 381 57.7
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 7.2e-103 378.3 381 57.2
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 4.0e-101 372.5 356 57.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.8e-101 371.3 442 51.8
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.5e-100 370.5 450 51.6
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 7.5e-100 368.2 333 62.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.3e-99 367.5 422 53.1
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.4e-98 364.0 327 60.9
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.0e-97 360.1 447 49.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 7.7e-97 358.2 389 55.5
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 7.7e-97 358.2 390 55.1
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.0e-96 357.8 378 56.9
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.3e-96 357.5 396 53.8
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.7e-96 357.1 250 70.8
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 3.8e-96 355.9 382 55.0
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 3.8e-96 355.9 378 58.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 6.6e-96 355.1 319 61.4
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 4.3e-95 352.4 365 55.6
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 5.6e-95 352.1 452 47.3
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 9.5e-95 351.3 384 54.9
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 2.8e-94 349.7 416 49.5
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 3.6e-94 349.4 358 54.2
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.4e-93 347.4 383 54.0
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.4e-93 347.4 233 73.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.6e-92 343.2 409 51.6
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 4.4e-92 342.4 354 56.8
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.2e-91 340.1 393 51.1
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.7e-91 339.3 411 51.6
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 4.9e-91 339.0 395 52.2
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 4.9e-91 339.0 359 54.6
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 2.4e-90 336.7 382 53.4
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.4e-90 336.7 379 54.6
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 5.4e-90 335.5 289 63.0
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 9.2e-90 334.7 389 52.2
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.5e-89 332.8 449 49.0
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 5.9e-89 332.0 391 50.4
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.9e-88 329.3 335 54.6
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.9e-88 329.3 390 51.0
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.6e-88 328.6 384 50.0
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 8.6e-88 328.2 299 59.9
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.5e-87 326.6 383 49.9
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 7.3e-87 325.1 256 63.7
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 1.2e-86 324.3 376 52.4
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.2e-86 324.3 300 59.3
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 2.1e-86 323.6 410 47.8
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.8e-86 323.2 353 53.5
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 2.8e-86 323.2 244 68.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 4.7e-86 322.4 357 54.6
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 4.7e-86 322.4 387 51.7
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 6.2e-86 322.0 313 56.5
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 6.2e-86 322.0 357 54.6
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 8.0e-86 321.6 311 57.2
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.0e-85 321.2 272 63.2
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.8e-85 320.5 239 67.4
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 3.1e-85 319.7 293 58.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 4.0e-85 319.3 240 63.3
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 4.0e-85 319.3 322 56.2
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 1.2e-84 317.8 239 66.9
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.4e-84 316.2 385 51.4
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 3.4e-84 316.2 349 51.9
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 4.4e-84 315.8 318 55.7
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 4.4e-84 315.8 313 58.1
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 5.8e-84 315.5 309 55.7
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 7.5e-84 315.1 371 51.5
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 9.8e-84 314.7 340 54.1
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.3e-83 314.3 403 49.4
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 3.7e-83 312.8 380 51.3
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 4.9e-83 312.4 240 63.8
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.4e-82 310.8 333 52.9
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.4e-82 310.8 254 65.4
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.4e-82 310.8 206 79.1
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 3.2e-82 309.7 331 52.9
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 9.2e-82 308.1 315 53.7
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 2.7e-81 306.6 385 51.4
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 3.5e-81 306.2 333 52.3
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 4.6e-81 305.8 333 52.3
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.3e-80 304.3 343 50.4
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 9.5e-79 298.1 380 50.0
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.6e-78 297.4 408 44.9
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.6e-78 297.4 240 63.8
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.1e-77 293.1 290 57.2
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 5.2e-77 292.4 262 58.8
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.5e-76 290.8 371 48.8
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 4.9e-75 285.8 237 59.9
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.9e-74 283.9 248 58.1
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.4e-74 282.3 278 55.0
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.2e-73 281.2 336 47.9
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 7.8e-73 278.5 332 50.9
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.0e-72 278.1 330 51.2
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 2.3e-72 276.9 266 56.0
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 5.1e-72 275.8 267 55.8
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.2e-70 271.2 385 44.2
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 3.6e-70 269.6 172 82.0
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.1e-69 268.1 346 46.8
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 6.8e-69 265.4 261 55.9
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.0e-68 263.8 378 45.5
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.1e-65 253.8 270 51.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 3.3e-63 246.5 289 47.4
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.2e-62 244.6 260 49.6
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.4e-60 236.5 201 62.7
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 9.9e-60 235.0 148 82.4
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 3.3e-55 219.9 149 77.9
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.8e-54 216.9 265 46.0
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-53 213.8 254 46.5
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.5e-52 211.1 245 53.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 9.9e-52 208.4 147 74.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.9e-47 194.1 129 76.0
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 4.3e-47 193.0 199 56.3
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.1e-45 186.8 139 69.1
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 5.5e-42 176.0 240 42.9
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 6.0e-41 172.6 146 65.8
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 7.9e-41 172.2 372 33.1
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.3e-40 171.4 205 44.9
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.8e-40 171.0 303 38.3
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.4e-36 156.8 168 50.6
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 7.9e-33 145.6 134 54.5
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 6.3e-30 136.0 125 52.0
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 4.1e-29 133.3 112 66.1
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 7.6e-28 129.0 119 58.0
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.7e-25 120.6 74 83.8
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 2.3e-24 117.5 110 58.2
Actinidia32113 Actinidia chinensis HOM05D001329 ORTHO05D004946 7.7e-20 102.4 206 43.2
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 8.5e-19 99.0 70 68.6
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 2.3e-16 90.9 62 75.8
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 2.6e-15 87.4 398 23.6
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.6e-15 87.4 59 74.6
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 7.4e-15 85.9 74 60.8
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 3.7e-14 83.6 79 46.8
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 3.7e-14 83.6 64 62.5
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 8.2e-14 82.4 67 61.2
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.4e-13 81.6 52 63.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 5.3e-13 79.7 52 61.5
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 8.5e-11 72.4 225 32.9
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 6.1e-09 66.2 52 67.3
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.0e-08 63.9 51 62.7
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 3.7e-06 57.0 52 55.8
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.7e-06 57.0 87 37.9


User provided reference genes

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