Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.4e-91 339.7 187 100.0
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.9e-85 319.3 187 94.7
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 5.3e-67 258.1 188 69.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.0e-62 243.8 193 68.4
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 8.8e-62 240.7 153 72.5
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 5.5e-56 221.5 153 67.3
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.7e-55 219.2 157 68.8
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 3.6e-55 218.8 153 67.3
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.4e-54 216.9 153 67.3
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.0e-54 215.3 168 67.3
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.2e-53 213.8 155 67.1
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 5.7e-53 211.5 153 60.8
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 5.7e-53 211.5 153 62.7
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 9.8e-53 210.7 153 60.8
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.8e-52 209.1 153 66.7
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.8e-51 206.5 154 63.6
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 3.1e-51 205.7 154 66.2
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.6e-50 203.4 153 64.7
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.3e-49 200.3 155 63.9
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.0e-49 198.4 133 70.7
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 6.5e-49 198.0 157 61.8
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-48 197.2 158 62.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.5e-48 196.8 168 58.3
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.5e-48 196.8 153 58.8
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.5e-48 196.1 157 59.9
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 3.2e-48 195.7 160 60.6
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.6e-47 193.4 161 60.9
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.6e-47 193.4 155 63.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 2.1e-47 193.0 153 59.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 6.1e-47 191.4 179 54.2
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 8.0e-47 191.0 154 62.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 8.0e-47 191.0 155 60.6
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.0e-46 190.7 153 60.1
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.8e-46 189.9 154 59.1
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.8e-46 189.9 154 59.1
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.3e-46 189.5 162 58.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 2.3e-46 189.5 153 60.1
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.0e-46 188.7 154 59.1
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 6.8e-46 188.0 155 60.6
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 2.0e-45 186.4 155 59.4
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.6e-45 186.0 155 57.4
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.6e-45 186.0 168 54.8
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 7.5e-45 184.5 154 61.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.5e-45 184.5 164 59.8
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 9.8e-45 184.1 157 59.2
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.3e-44 183.7 159 61.6
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.7e-44 183.3 155 58.1
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.8e-44 182.6 153 58.2
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 3.7e-44 182.2 157 61.1
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 3.7e-44 182.2 160 56.9
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 4.9e-44 181.8 154 57.1
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.9e-44 181.8 212 50.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.4e-43 180.3 154 57.8
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.1e-43 178.7 161 57.8
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.1e-43 178.7 157 55.4
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 5.4e-43 178.3 153 52.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 9.1e-43 177.6 155 56.8
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.6e-42 176.8 109 75.2
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.6e-42 176.8 156 55.8
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 2.0e-42 176.4 156 57.7
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.0e-42 176.4 189 50.8
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.7e-42 176.0 153 58.8
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 4.5e-42 175.3 157 54.8
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 4.5e-42 175.3 164 57.3
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 5.9e-42 174.9 155 56.8
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 7.7e-42 174.5 153 57.5
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.0e-41 174.1 161 52.2
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.3e-41 172.9 157 55.4
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.8e-41 172.2 156 54.5
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 6.6e-41 171.4 150 56.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.1e-40 170.6 153 51.6
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.1e-40 170.6 131 62.6
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.9e-40 169.9 156 53.8
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.2e-39 167.2 163 50.9
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.6e-39 166.8 163 52.8
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.6e-39 166.8 155 55.5
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 1.6e-39 166.8 155 56.8
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.1e-39 166.4 160 53.1
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 8.0e-39 164.5 153 52.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.4e-38 163.7 163 52.8
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.8e-38 163.3 165 53.3
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.3e-38 162.9 160 51.2
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 5.2e-38 161.8 163 52.1
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 6.8e-38 161.4 154 56.5
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-37 160.6 154 55.2
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.5e-37 160.2 155 52.3
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.5e-37 160.2 159 54.7
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.0e-37 159.8 162 51.9
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 2.0e-37 159.8 167 49.7
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 2.6e-37 159.5 168 48.8
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 2.6e-37 159.5 168 48.8
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.6e-37 159.5 167 52.1
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 3.4e-37 159.1 168 48.8
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 3.4e-37 159.1 168 48.8
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 3.4e-37 159.1 168 48.8
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.4e-37 159.1 154 53.2
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 4.4e-37 158.7 158 50.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 5.7e-37 158.3 169 48.5
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.5e-37 157.9 161 53.4
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 7.5e-37 157.9 157 52.9
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 7.5e-37 157.9 154 51.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.7e-36 156.8 153 51.0
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.7e-36 156.8 155 49.0
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.8e-35 153.3 123 69.1
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.8e-35 153.3 157 51.6
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.6e-34 150.2 182 47.8
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 3.5e-34 149.1 114 67.5
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.0e-33 147.5 135 52.6
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.7e-33 146.7 127 58.3
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 6.6e-33 144.8 144 50.7
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.5e-32 143.7 158 48.1
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.3e-32 141.4 158 46.2
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-31 140.6 183 43.7
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 3.6e-31 139.0 109 58.7
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.4e-30 137.1 183 43.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 3.1e-30 136.0 145 47.6
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.1e-30 136.0 114 55.3
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 5.8e-29 131.7 183 44.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 9.8e-29 131.0 112 58.0
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.9e-28 129.4 118 55.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.9e-28 129.4 99 62.6
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.9e-27 126.7 153 44.4
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.6e-26 123.6 157 43.9
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.0e-25 120.9 155 42.6
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.7e-25 120.2 140 49.3
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.1e-24 117.5 158 43.0
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.5e-24 117.1 187 41.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 3.3e-24 115.9 90 58.9
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 7.3e-24 114.8 186 39.8
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 9.5e-24 114.4 153 43.1
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 2.3e-22 109.8 126 46.8
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-21 107.5 160 42.5
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-21 107.5 160 42.5
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 3.4e-21 105.9 160 41.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 5.8e-21 105.1 96 53.1
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.3e-20 104.0 160 43.1
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.4e-19 99.8 127 40.2
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.4e-19 99.8 157 42.0
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 7.1e-19 98.2 176 35.8
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.2e-18 97.4 244 32.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.7e-18 96.3 92 55.4
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.7e-18 96.3 68 66.2
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.3e-17 94.0 155 38.1
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 2.3e-17 93.2 114 46.5
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.0e-17 92.8 172 33.7
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.1e-17 92.0 165 38.2
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 5.6e-16 88.6 168 38.1
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 3.1e-14 82.8 44 86.4
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 2.4e-11 73.2 114 37.7
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.3e-09 66.6 219 25.1
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.1e-07 60.1 124 34.7
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 8.9e-06 54.7 89 38.2


User provided reference genes

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