Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-80 302.8 152 100.0
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.4e-46 189.9 150 60.0
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.9e-46 189.5 150 60.7
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.5e-39 164.1 150 54.0
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.0e-37 157.5 145 57.9
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-36 156.4 144 52.1
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.5e-35 151.0 150 53.3
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-30 135.2 158 47.5
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.0e-28 128.6 147 44.9
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.8e-28 127.5 140 46.4
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.3e-26 120.9 145 46.2
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.1e-25 120.6 145 46.2
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.4e-25 120.2 150 42.7
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 2.4e-25 119.4 131 46.6
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.1e-25 119.0 147 46.3
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.1e-25 119.0 145 45.5
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 5.4e-25 118.2 145 44.8
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.4e-25 118.2 125 48.8
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-24 117.1 150 43.3
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.6e-24 116.7 147 44.2
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-24 116.3 145 44.8
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 7.7e-24 114.4 145 42.8
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 2.2e-23 112.8 143 40.6
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.8e-23 112.1 147 43.5
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 5.5e-22 108.2 150 40.7
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.5e-22 108.2 125 46.4
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 5.5e-22 108.2 130 43.8
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-21 106.7 121 47.1
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.6e-21 105.5 145 42.1
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.0e-20 102.4 143 38.5
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.0e-20 102.4 120 46.7
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-19 100.5 143 39.2
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.2e-19 100.5 145 40.0
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.4e-19 98.6 145 39.3
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.4e-19 98.6 145 39.3
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.8e-19 97.4 145 39.3
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.7e-18 96.7 147 38.1
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.2e-18 96.3 148 37.8
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.3e-18 94.7 122 41.8
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.1e-17 94.0 144 36.8
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 1.2e-16 90.5 133 36.8
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.2e-16 90.5 110 45.5
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.6e-16 90.1 145 34.5
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 1.6e-16 90.1 144 36.8
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-16 89.7 95 49.5
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.7e-16 89.4 135 36.3
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 3.5e-16 89.0 125 37.6
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 5.9e-16 88.2 129 36.4
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-15 86.3 96 43.8
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 6.6e-15 84.7 147 39.5
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.5e-14 82.8 105 40.0
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 2.5e-14 82.8 82 47.6
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 3.3e-14 82.4 87 47.1
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 3.3e-14 82.4 105 45.7
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 4.3e-14 82.0 146 31.5
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 1.2e-13 80.5 122 36.1
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.6e-13 80.1 140 35.0
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.8e-13 79.3 144 31.2
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 2.8e-13 79.3 144 34.7
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.8e-13 79.3 134 37.3
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 3.6e-13 79.0 96 43.8
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.7e-13 78.6 143 35.0
Lj1P1006T30 Lonicera japonica HOM05D008183 ORTHO05D007254 6.1e-13 78.2 129 33.3
CSS0029699 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 8.0e-13 77.8 94 44.7
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 2.3e-12 76.3 146 32.9
CSS0036848 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 3.0e-12 75.9 87 43.7
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 3.0e-12 75.9 115 37.4
CSS0049610 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 6.8e-12 74.7 96 42.7
Sc06g0010720 Simmondsia chinensis HOM05D009348 ORTHO05D015627 2.0e-11 73.2 129 34.9
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 3.4e-11 72.4 98 41.8
vmacro13033 Vaccinium macrocarpon HOM05D000076 ORTHO05D007254 3.4e-11 72.4 93 38.7
Sc20g0000530 Simmondsia chinensis HOM05D013236 ORTHO05D007254 4.4e-11 72.0 135 29.6
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 5.7e-11 71.6 147 30.6
Sc05g0006150 Simmondsia chinensis HOM05D013236 ORTHO05D007254 5.7e-11 71.6 113 36.3
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.8e-11 70.9 97 38.1
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 9.8e-11 70.9 146 34.9
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 3.7e-10 68.9 147 32.0
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 3.7e-10 68.9 101 37.6
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 3.7e-10 68.9 106 33.0
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-10 68.6 138 31.9
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 6.4e-10 68.2 146 30.1
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 8.3e-10 67.8 82 40.2
COL.COLO4_27602 Corchorus olitorius HOM05D013144 ORTHO05D009449 1.1e-09 67.4 150 32.7
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.8e-09 66.6 138 30.4
Lj7C433G3 Lonicera japonica HOM05D000005 ORTHO05D007073 3.2e-09 65.9 112 36.6
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 3.2e-09 65.9 143 29.4
Rhsim12G0201300 Rhododendron simsii HOM05D002908 ORTHO05D009379 3.2e-09 65.9 79 44.3
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 5.4e-09 65.1 98 35.7
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 9.2e-09 64.3 147 31.3
Lj1g0019137 Lotus japonicus HOM05D000003 ORTHO05D007254 9.2e-09 64.3 146 30.8
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 1.2e-08 63.9 73 43.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.2e-08 63.9 86 40.7
Eucgr.B02966 Eucalyptus grandis HOM05D051647 ORTHO05D045349 1.6e-08 63.5 152 28.3
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 2.0e-08 63.2 96 35.4
Atru.chr1.3769 Acer truncatum HOM05D000003 ORTHO05D000167 2.7e-08 62.8 145 31.0
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 2.7e-08 62.8 143 32.9
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.7e-08 62.8 120 33.3
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 3.5e-08 62.4 129 34.9
CSS0033631 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 4.6e-08 62.0 99 37.4
Rhsim03G0129900 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.6e-08 62.0 85 36.5
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 5.9e-08 61.6 147 29.9
RhsimUnG0189600 Rhododendron simsii HOM05D000038 ORTHO05D000423 5.9e-08 61.6 63 47.6
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 5.9e-08 61.6 118 33.9
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 7.8e-08 61.2 149 25.5
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-07 60.5 123 33.3
CSS0002638 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.3e-07 60.5 98 39.8
CSS0025139 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.3e-07 60.5 98 39.8
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 1.3e-07 60.5 148 29.7
Sc04g0007770 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.3e-07 60.5 106 32.1
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.0e-07 59.3 124 31.5
Lj5g0008185 Lotus japonicus HOM05D000003 ORTHO05D007254 3.0e-07 59.3 146 28.8
PSO532G0007 Papaver somniferum HOM05D003407 ORTHO05D001026 3.0e-07 59.3 147 26.5
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 3.0e-07 59.3 140 30.0
Atru.chr4.152 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-07 58.9 143 30.8
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-07 58.5 147 29.9
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 5.0e-07 58.5 146 29.5
CSS0013596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 5.0e-07 58.5 43 65.1
Duzib147G0680 Durio zibethinus HOM05D000152 ORTHO05D000609 5.0e-07 58.5 101 33.7
Sc07g0002440 Simmondsia chinensis HOM05D013236 ORTHO05D007254 6.6e-07 58.2 71 40.8
Lj3C625T2 Lonicera japonica HOM05D008183 ORTHO05D007254 8.6e-07 57.8 84 35.7
COL.COLO4_10073 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.5e-06 57.0 107 31.8
Lj1P880T38 Lonicera japonica HOM05D008183 ORTHO05D007254 1.5e-06 57.0 102 30.4
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 1.9e-06 56.6 147 21.1
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 56.2 148 29.7
Atru.chr10.1383 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-06 56.2 107 32.7
Lj2g0001686 Lotus japonicus HOM05D000003 ORTHO05D007254 2.5e-06 56.2 139 28.1
Sc09g0005610 Simmondsia chinensis HOM05D013953 ORTHO05D016376 2.5e-06 56.2 91 36.3
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-06 55.8 151 29.1
Lj5g0027405 Lotus japonicus HOM05D000003 ORTHO05D007254 3.3e-06 55.8 139 28.1
vmacro10044 Vaccinium macrocarpon HOM05D000500 ORTHO05D000367 3.3e-06 55.8 61 39.3
arahy.Tifrunner.gnm1.ann1.0Y1AJC Arachis hypogaea HOM05D027442 ORTHO05D000167 5.6e-06 55.1 136 30.1
Lj6g0001178 Lotus japonicus HOM05D000003 ORTHO05D000004 5.6e-06 55.1 139 28.1
Sed0015376 Sechium edule HOM05D000003 ORTHO05D000167 5.6e-06 55.1 127 27.6
vmacro18048 Vaccinium macrocarpon HOM05D000611 ORTHO05D004334 5.6e-06 55.1 78 39.7
FvH4_3g24611 Fragaria vesca HOM05D000003 ORTHO05D000004 7.3e-06 54.7 152 27.6
Lju225C5T9 Lonicera japonica HOM05D008183 ORTHO05D007254 7.3e-06 54.7 80 37.5
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 7.3e-06 54.7 128 28.1
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-06 54.3 140 27.1
FvH4_6g18361 Fragaria vesca HOM05D000003 ORTHO05D000022 9.5e-06 54.3 122 32.0
Prupe.3G190000 Prunus persica HOM05D008133 ORTHO05D009449 9.5e-06 54.3 111 30.6
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 9.5e-06 54.3 148 27.0


User provided reference genes

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