Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-150 535.8 282 100.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.5e-142 509.6 301 92.4
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.1e-121 440.3 282 81.9
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.5e-121 439.9 274 85.0
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 5.7e-121 438.0 278 82.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.8e-120 434.9 278 80.2
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.1e-119 432.2 282 80.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.8e-117 425.2 273 81.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.1e-115 419.5 286 78.7
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 1.4e-114 416.8 273 80.2
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.9e-114 415.2 274 79.9
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.8e-112 409.1 278 77.0
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.8e-112 409.1 268 80.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 4.8e-112 408.3 280 76.1
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 6.3e-112 407.9 275 76.7
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 1.1e-111 407.1 261 81.6
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 1.4e-111 406.8 258 79.1
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 3.1e-111 405.6 262 81.7
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 9.1e-111 404.1 256 78.9
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 9.1e-111 404.1 260 80.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 9.1e-111 404.1 306 71.9
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 9.1e-111 404.1 288 74.7
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.2e-110 403.7 276 74.3
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.2e-110 403.7 263 77.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 3.4e-110 402.1 273 78.0
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 5.9e-110 401.4 296 72.3
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 7.7e-110 401.0 282 75.2
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 7.7e-110 401.0 277 77.3
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.0e-109 400.6 264 79.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.0e-109 400.6 257 78.6
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.7e-109 399.8 263 77.6
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.7e-109 399.8 256 78.5
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-109 399.4 274 74.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.2e-109 399.4 277 75.5
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.2e-109 399.4 252 80.2
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.2e-109 399.4 270 76.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 2.9e-109 399.1 256 78.9
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.9e-109 399.1 261 78.5
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 3.8e-109 398.7 279 74.6
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 5.0e-109 398.3 261 78.9
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.5e-109 397.9 274 74.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 8.5e-109 397.5 263 76.0
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 8.5e-109 397.5 261 79.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-108 397.1 274 74.1
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.1e-108 397.1 261 79.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.4e-108 396.7 274 73.7
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.4e-108 396.7 256 78.9
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.9e-108 396.4 263 76.0
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.9e-108 396.4 261 78.9
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 4.2e-108 395.2 261 77.8
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 5.5e-108 394.8 261 76.6
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 9.4e-108 394.0 274 73.4
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.2e-107 393.7 260 77.7
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 3.6e-107 392.1 262 74.4
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.7e-107 391.7 251 79.3
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 4.7e-107 391.7 271 77.1
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.0e-106 390.6 274 73.7
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.4e-106 390.2 261 77.0
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.3e-106 389.4 272 74.6
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.8e-106 387.5 271 74.2
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 8.8e-106 387.5 257 77.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.3e-105 385.6 286 69.6
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 3.3e-105 385.6 256 77.0
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 7.4e-105 384.4 262 75.2
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 9.7e-105 384.0 333 65.5
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.3e-104 383.6 256 77.0
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.7e-104 382.1 269 75.5
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 6.3e-104 381.3 262 72.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 8.2e-104 380.9 256 75.4
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.1e-103 380.6 262 72.9
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.8e-103 379.8 262 72.5
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.4e-103 379.4 270 73.0
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 5.3e-103 378.3 262 72.1
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 5.3e-103 378.3 251 77.3
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 7.0e-103 377.9 257 75.5
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 9.1e-103 377.5 271 73.8
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.2e-102 377.1 262 71.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.2e-102 377.1 280 71.4
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.2e-102 377.1 270 70.0
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.5e-102 376.7 262 73.3
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.0e-102 376.3 277 69.3
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 3.5e-102 375.6 262 71.4
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.7e-101 373.2 262 71.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 2.9e-101 372.5 277 69.0
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 5.0e-101 371.7 262 70.6
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-100 370.5 262 70.6
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 7.2e-100 367.9 277 70.8
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 4.7e-99 365.2 272 68.4
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 4.0e-98 362.1 257 74.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.6e-97 359.4 257 72.0
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.8e-96 355.9 245 75.5
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.4e-95 353.6 318 61.6
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-95 353.2 224 79.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-95 353.2 224 79.9
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.1e-95 352.1 246 74.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 4.1e-95 352.1 273 65.6
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 6.5e-93 344.7 254 69.3
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 6.1e-91 338.2 257 64.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.1e-87 325.9 249 67.5
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.0e-87 324.7 211 80.1
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.2e-86 323.9 408 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 5.7e-81 305.1 253 60.1
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 5.7e-81 305.1 222 74.3
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.6e-78 297.0 212 72.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.0e-77 294.3 209 74.6
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.0e-77 294.3 181 83.4
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.1e-76 290.8 247 59.1
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.2e-75 287.3 219 71.2
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.1e-75 286.6 219 68.5
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.1e-75 286.6 269 55.8
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 8.0e-75 284.6 209 75.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.5e-73 280.4 252 57.1
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 2.6e-73 279.6 247 54.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 7.8e-70 268.1 293 53.9
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.3e-69 266.5 247 55.5
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.6e-69 264.6 170 82.4
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.7e-61 240.4 236 63.1
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.6e-54 217.2 237 51.1
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.0e-53 213.0 175 64.0
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.6e-51 207.2 233 48.9
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 6.2e-51 205.3 253 47.4
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 1.8e-50 203.8 172 64.5
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 6.6e-45 185.3 150 66.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 3.4e-41 172.9 268 39.9
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 2.6e-25 120.2 87 74.7
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.1e-19 100.5 72 72.2
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.4e-18 97.1 85 62.4
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.7e-16 90.9 63 63.5
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.7e-16 90.9 72 63.9
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 6.5e-16 89.0 57 80.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 6.0e-14 82.4 53 79.2
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.0e-09 67.4 51 56.9
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.6e-09 67.0 42 81.0
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 7.6e-09 65.5 46 63.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.9e-08 63.5 48 56.2
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.2e-07 59.7 227 28.6
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.2e-06 58.2 87 43.7
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 4.6e-06 56.2 220 26.8
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 4.6e-06 56.2 289 24.9


User provided reference genes

Program Settings