Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 8.4e-171 603.6 304 100.0
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.4e-117 426.0 298 72.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 9.4e-114 414.1 298 71.1
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.2e-95 354.0 290 65.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.9e-94 349.4 298 62.4
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.6e-92 343.6 298 61.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.0e-92 343.2 297 61.6
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.0e-92 343.2 301 59.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 7.8e-92 341.3 300 60.3
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.0e-91 340.9 311 57.2
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.3e-91 340.5 293 57.7
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.7e-89 332.0 303 59.1
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.4e-88 330.5 293 58.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 3.4e-87 325.9 292 58.9
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.4e-86 321.6 300 59.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.0e-83 314.3 302 58.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.6e-83 311.6 299 54.2
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.9e-82 310.1 309 57.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.9e-82 310.1 295 58.3
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 7.3e-82 308.1 339 53.1
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.0e-79 300.1 304 52.6
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 5.8e-79 298.5 300 54.7
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 5.8e-79 298.5 296 57.1
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 7.6e-79 298.1 300 56.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.9e-77 293.5 298 53.7
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.2e-77 292.7 292 55.8
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.1e-77 291.6 294 55.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.1e-76 290.0 294 55.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-76 290.0 294 55.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.7e-75 287.0 298 54.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.3e-75 286.6 294 53.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-75 286.6 294 54.4
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.6e-75 285.0 294 54.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 5.6e-74 282.0 303 52.8
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.6e-74 282.0 305 50.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.6e-73 280.4 303 49.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.6e-73 280.4 295 51.2
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-73 280.0 326 50.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.1e-73 280.0 298 53.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.1e-73 280.0 297 50.5
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 6.2e-73 278.5 296 53.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.4e-72 277.3 303 52.5
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 8.9e-72 274.6 301 49.5
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 8.9e-72 274.6 299 52.5
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 2.6e-71 273.1 297 49.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.4e-71 272.7 294 50.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.4e-71 272.7 301 49.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.4e-71 272.3 300 53.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 7.6e-71 271.6 297 51.2
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.7e-70 270.4 299 52.2
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.1e-69 267.7 296 51.4
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.4e-69 266.5 294 48.6
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 4.2e-69 265.8 299 50.8
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 7.1e-69 265.0 299 52.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.2e-68 264.2 260 51.5
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.7e-68 263.1 299 51.8
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.7e-68 263.1 303 49.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 7.8e-68 261.5 297 47.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.0e-67 261.2 292 50.3
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.7e-67 260.4 147 84.4
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.7e-67 260.4 300 48.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.7e-67 260.4 294 53.1
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.5e-66 257.3 297 47.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 4.3e-66 255.8 292 50.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 5.6e-66 255.4 297 48.8
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.3e-65 254.2 296 48.6
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.1e-65 253.4 299 48.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.8e-65 253.1 293 48.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.8e-65 252.3 198 65.2
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 3.4e-63 246.1 336 44.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 3.8e-62 242.7 294 48.3
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 5.4e-61 238.8 276 48.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.1e-60 236.9 298 46.3
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.7e-59 233.8 211 59.7
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.0e-59 233.0 274 48.5
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.5e-58 230.7 293 44.7
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 4.8e-57 225.7 267 45.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 8.1e-57 224.9 293 44.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.4e-56 224.2 222 54.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 4.0e-56 222.6 293 44.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 6.9e-56 221.9 205 57.6
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.2e-55 221.1 299 44.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-51 207.6 292 42.5
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.8e-51 207.2 292 42.5
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 8.7e-51 204.9 310 41.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 9.6e-50 201.4 145 69.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 8.1e-49 198.4 222 49.1
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.4e-48 196.8 291 41.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 8.4e-46 188.3 237 48.1
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-45 188.0 221 48.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.0e-43 181.4 297 38.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.9e-43 179.5 191 52.9
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.9e-43 179.5 163 54.6
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.5e-39 167.5 233 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.4e-39 166.4 313 32.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-37 160.2 213 46.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 7.2e-37 158.7 254 37.4
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 9.3e-37 158.3 234 42.7
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 9.3e-37 158.3 242 40.9
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.7e-36 156.8 303 35.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.0e-35 154.8 235 41.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 7.7e-31 138.7 302 36.4
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.3e-30 137.9 213 38.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.3e-30 137.9 138 53.6
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 3.2e-29 133.3 203 38.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.2e-29 132.9 113 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.2e-28 131.3 260 31.9
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.1e-28 129.0 157 45.2
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.3e-27 127.1 296 32.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 3.0e-27 126.7 350 28.9
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-26 124.8 98 66.3
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.0e-26 124.0 109 62.4
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 4.3e-26 122.9 73 87.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.2e-25 120.6 169 42.0
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.3e-25 119.0 62 95.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.4e-23 113.2 126 54.8
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.9e-22 110.2 106 53.8
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.7e-20 102.8 303 28.4
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 3.9e-19 99.8 61 75.4
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.1e-18 98.2 61 75.4
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-18 98.2 61 73.8
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.2e-17 92.0 80 63.8
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.2e-17 92.0 80 63.8
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 8.5e-14 82.0 101 47.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 6.7e-11 72.4 49 65.3
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.1e-10 71.6 129 34.1
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.3e-10 70.1 192 30.2
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 7.7e-07 58.9 156 30.8


User provided reference genes

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