Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.1e-75 284.6 144 100.0
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.0e-57 226.9 179 71.5
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.0e-57 226.9 179 71.5
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.3e-56 221.5 179 69.8
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 1.8e-51 206.1 176 67.0
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 3.0e-49 198.7 176 63.6
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 1.5e-48 196.4 175 62.3
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.5e-48 196.4 181 61.9
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 1.9e-48 196.1 172 63.4
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 3.3e-48 195.3 172 64.0
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 4.3e-48 194.9 175 62.3
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 7.3e-48 194.1 178 63.5
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 7.3e-48 194.1 178 63.5
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 9.5e-48 193.7 178 62.9
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 2.8e-47 192.2 175 64.0
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 6.2e-47 191.0 181 59.1
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 6.2e-47 191.0 182 60.4
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 8.0e-47 190.7 171 63.7
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 1.4e-46 189.9 165 65.5
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 1.4e-46 189.9 176 63.1
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 2.3e-46 189.1 178 61.2
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 6.8e-46 187.6 181 57.5
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 1.5e-45 186.4 171 62.0
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 1.5e-45 186.4 172 61.0
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 2.6e-45 185.7 172 61.0
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 3.4e-45 185.3 175 62.3
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 4.4e-45 184.9 176 60.2
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 4.4e-45 184.9 172 60.5
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 4.4e-45 184.9 169 63.3
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 5.8e-45 184.5 172 60.5
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 7.5e-45 184.1 172 59.9
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 7.5e-45 184.1 170 60.6
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 1.3e-44 183.3 179 57.0
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 1.7e-44 183.0 175 61.7
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 2.2e-44 182.6 175 61.1
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 2.2e-44 182.6 172 61.6
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 6.4e-44 181.0 178 59.6
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.4e-44 181.0 171 62.0
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 1.4e-43 179.9 172 59.9
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 2.4e-43 179.1 171 61.4
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 5.4e-43 177.9 171 58.5
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 7.0e-43 177.6 176 56.8
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.0e-43 177.6 171 60.8
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.0e-43 177.6 171 60.8
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 9.2e-43 177.2 175 56.6
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 9.2e-43 177.2 171 58.5
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 2.1e-42 176.0 171 57.3
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 4.6e-42 174.9 174 56.3
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 4.6e-42 174.9 181 57.5
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 4.6e-42 174.9 172 58.7
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 6.0e-42 174.5 180 55.0
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 1.0e-41 173.7 182 58.2
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 1.3e-41 173.3 176 58.5
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 1.7e-41 172.9 172 58.1
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 2.3e-41 172.6 175 55.4
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 2.3e-41 172.6 171 57.9
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.3e-41 172.6 171 57.3
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.3e-41 172.6 176 56.2
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 3.9e-41 171.8 183 52.5
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 5.0e-41 171.4 175 56.6
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 1.1e-40 170.2 183 52.5
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 1.5e-40 169.9 171 56.1
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 1.5e-40 169.9 166 62.0
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 3.3e-40 168.7 174 54.6
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 4.3e-40 168.3 170 58.2
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 5.6e-40 167.9 174 54.6
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 7.3e-40 167.5 183 50.8
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 7.3e-40 167.5 171 56.7
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 9.5e-40 167.2 185 54.1
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 1.6e-39 166.4 179 55.9
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 2.1e-39 166.0 170 56.5
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 2.8e-39 165.6 176 52.3
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 3.6e-39 165.2 177 54.8
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.2e-38 161.4 134 68.7
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 5.2e-38 161.4 170 56.5
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.8e-38 161.0 167 59.9
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 1.2e-37 160.2 164 56.7
Peaxi162Scf00246g01122 Petunia axillaris HOM05D004612 ORTHO05D004940 1.2e-37 160.2 168 56.0
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 1.5e-37 159.8 167 54.5
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 3.4e-37 158.7 171 55.0
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.4e-37 158.3 214 47.7
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 7.5e-37 157.5 170 52.9
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 7.5e-37 157.5 171 54.4
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 7.5e-37 157.5 171 50.9
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 1.3e-36 156.8 177 52.5
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 1.7e-36 156.4 171 53.8
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 2.2e-36 156.0 181 49.7
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 3.7e-36 155.2 171 51.5
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 3.7e-36 155.2 171 53.8
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 3.7e-36 155.2 171 53.8
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 6.4e-36 154.5 214 47.2
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 1.4e-35 153.3 171 52.6
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 3.2e-35 152.1 174 52.3
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 4.1e-35 151.8 170 50.0
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 7.1e-35 151.0 167 52.1
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 7.1e-35 151.0 177 51.4
Peaxi162Scf00397g00041 Petunia axillaris HOM05D004612 ORTHO05D004940 4.6e-34 148.3 164 53.7
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 6.6e-33 144.4 162 54.9
Zm00001eb433970 Zea mays HOM05D004612 ORTHO05D004940 6.6e-33 144.4 165 50.9
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 8.6e-33 144.1 166 51.2
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 1.1e-32 143.7 173 49.1
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 4.3e-32 141.7 159 52.2
vmacro13422 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.1e-31 139.4 180 50.6
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 1.8e-30 136.3 132 58.3
Gohir.D02G148550 Gossypium hirsutum HOM05D004612 ORTHO05D004940 6.8e-30 134.4 151 57.0
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 8.9e-30 134.0 171 48.0
AUR62023440 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.3e-28 130.2 152 48.7
AUR62033327 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.3e-28 130.2 152 48.7
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 8.4e-28 127.5 147 55.1
BcaNung07163 Brassica carinata HOM05D004612 ORTHO05D004940 1.4e-27 126.7 143 51.0
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-27 126.3 130 60.8
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 4.1e-27 125.2 150 53.3
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 4.1e-27 125.2 178 46.1
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 9.2e-27 124.0 96 69.8
BcaNung05358 Brassica carinata HOM05D004612 ORTHO05D004940 1.2e-26 123.6 147 52.4
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 7.8e-26 120.9 118 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1798 Anthoceros agrestis HOM05D004612 ORTHO05D004940 1.1e-24 117.1 167 41.3
Gorai.005G189400 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.1e-24 117.1 144 52.8
PGSC0003DMG400021637 Solanum tuberosum HOM05D004612 ORTHO05D004940 1.5e-24 116.7 100 60.0
Gohir.D02G101800 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.3e-24 115.2 88 72.7
CDE05G3327 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 6.2e-23 111.3 88 65.9
Gorai.005G115400 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.1e-22 110.5 88 70.5
Gohir.D11G259000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.8e-22 109.8 88 70.5
CARHR288840 Cardamine hirsuta HOM05D004612 ORTHO05D004940 2.4e-22 109.4 100 61.0
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 3.1e-22 109.0 189 42.3
Gorai.007G277100 Gossypium raimondii HOM05D004612 ORTHO05D004940 7.6e-21 104.4 93 66.7
Mapoly0068s0044 Marchantia polymorpha HOM05D004612 ORTHO05D004940 3.8e-20 102.1 169 39.6
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 6.4e-20 101.3 158 38.6
vmacro13310 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.4e-19 99.4 139 46.8
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 1.1e-16 90.5 130 45.4
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.6e-15 86.7 58 81.0
SMO364G0809 Selaginella moellendorffii HOM05D004612 ORTHO05D004940 2.1e-15 86.3 173 34.1
Gohir.D02G169000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 2.2e-12 76.3 68 64.7
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 4.9e-12 75.1 120 42.5
CSS0020995 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.4e-12 74.7 51 76.5
CSS0011716 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.4e-12 74.3 50 80.0
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.0e-10 68.2 52 69.2
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 1.5e-08 63.5 73 49.3
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 1.9e-08 63.2 38 78.9
vmacro13311 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 3.3e-08 62.4 102 40.2
BraA09t39921Z Brassica rapa HOM05D000302 ORTHO05D001604 4.3e-08 62.0 45 68.9
HPP92_021084 Vanilla planifolia HOM05D004612 ORTHO05D004940 1.1e-06 57.4 40 70.0


User provided reference genes

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