Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007524 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 6.6e-31 136.7 69 100.0
CSS0031826 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 6.6e-15 83.6 46 91.3
DCAR_032010 Daucus carota HOM05D002187 ORTHO05D002243 4.3e-14 80.9 46 89.1
DCAR_032011 Daucus carota HOM05D002187 ORTHO05D002243 4.3e-14 80.9 46 89.1
Glyma.04G058600 Glycine max HOM05D002187 ORTHO05D002243 9.6e-14 79.7 48 81.2
Lalb_Chr11g0063441 Lupinus albus HOM05D002187 ORTHO05D002243 9.6e-14 79.7 46 82.6
CSS0041289 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.3e-13 79.3 58 74.1
TAR622G0938 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.3e-13 79.3 46 82.6
Hma1.2p1_0588F.1_g184435 Hydrangea macrophylla HOM05D002187 ORTHO05D002243 1.6e-13 79.0 46 80.4
arahy.Tifrunner.gnm1.ann1.MVX6LJ Arachis hypogaea HOM05D002187 ORTHO05D002243 2.1e-13 78.6 46 82.6
arahy.Tifrunner.gnm1.ann1.Z7V5PV Arachis hypogaea HOM05D002187 ORTHO05D002243 2.1e-13 78.6 46 82.6
CSS0041548 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 2.1e-13 78.6 48 83.3
Duzib168G0778 Durio zibethinus HOM05D002187 ORTHO05D002243 2.1e-13 78.6 46 82.6
VMungo1309G0795 Vigna mungo HOM05D002187 ORTHO05D002243 2.1e-13 78.6 46 82.6
MBI15_g22710_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 2.8e-13 78.2 46 82.6
SGA_v2.0_scaffold193G40698 Striga asiatica HOM05D002187 ORTHO05D002243 2.8e-13 78.2 46 80.4
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 2.8e-13 78.2 46 82.6
AUR62020302 Chenopodium quinoa HOM05D002187 ORTHO05D002243 3.6e-13 77.8 46 82.6
AUR62037697 Chenopodium quinoa HOM05D002187 ORTHO05D002243 3.6e-13 77.8 46 82.6
Sed0019319 Sechium edule HOM05D002187 ORTHO05D002243 3.6e-13 77.8 46 82.6
EL10Ac2g02433 Beta vulgaris HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 80.4
Gohir.A05G062800 Gossypium hirsutum HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 80.4
Gohir.A05G062866 Gossypium hirsutum HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 80.4
Gohir.D05G065300 Gossypium hirsutum HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 80.4
Gorai.009G066100 Gossypium raimondii HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 80.4
Lalb_Chr08g0244591 Lupinus albus HOM05D002187 ORTHO05D002243 4.8e-13 77.4 46 78.3
Lj7A742T21 Lonicera japonica HOM05D002187 ORTHO05D002243 6.2e-13 77.0 48 77.1
Oeu014157.2 Olea europaea HOM05D002187 ORTHO05D002243 6.2e-13 77.0 46 82.6
Sc09g0010820 Simmondsia chinensis HOM05D002187 ORTHO05D002243 6.2e-13 77.0 46 82.6
CSS0022441 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 8.1e-13 76.6 46 80.4
COL.COLO4_19002 Corchorus olitorius HOM05D002187 ORTHO05D002243 8.1e-13 76.6 46 78.3
Sed0019494 Sechium edule HOM05D002187 ORTHO05D002243 1.1e-12 76.3 46 80.4
Actinidia06442 Actinidia chinensis HOM05D002187 ORTHO05D002243 1.4e-12 75.9 49 75.5
Atru.chr7.2605 Acer truncatum HOM05D002187 ORTHO05D002243 1.8e-12 75.5 46 78.3
Potri.018G013400 Populus trichocarpa HOM05D002187 ORTHO05D002243 1.8e-12 75.5 46 80.4
THA.LOC104814977 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 1.8e-12 75.5 46 80.4
Thecc.09G010800 Theobroma cacao HOM05D002187 ORTHO05D002243 1.8e-12 75.5 46 80.4
AL6G21270 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
AT5G10730 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
BcaB05g21501 Brassica carinata HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
BcaC03g13327 Brassica carinata HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
A02p00620 Brassica napus HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
A10p26870 Brassica napus HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
C02p04610 Brassica napus HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
C09p66040 Brassica napus HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
BolC2t06421H Brassica oleracea HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
BraA02t05045Z Brassica rapa HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
BraA10t44740Z Brassica rapa HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
Carub.0006s0920 Capsella rubella HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
CARHR202590 Cardamine hirsuta HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
Duzib187G1650 Durio zibethinus HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 78.3
ECA233G0933 Erigeron canadensis HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 78.3
Sp6g32730 Schrenkiella parvula HOM05D002187 ORTHO05D002243 2.4e-12 75.1 46 80.4
CDE04G0777 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 3.1e-12 74.7 48 75.0
Dinv34872 Davidia involucrata HOM05D002187 ORTHO05D002243 3.1e-12 74.7 46 78.3
HanXRQChr05g0135621 Helianthus annuus HOM05D002187 ORTHO05D002243 3.1e-12 74.7 46 78.3
Phvul.009G085100 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 3.1e-12 74.7 46 76.1
Ca_15795_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 78.3
Ciclev10009111m.g Citrus clementina HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 78.3
Nitab4.5_0000989g0040 Nicotiana tabacum HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 76.1
Nitab4.5_0003933g0020 Nicotiana tabacum HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 76.1
Peaxi162Scf00045g01833 Petunia axillaris HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 76.1
SalBow4G2070 Salvia bowleyana HOM05D002187 ORTHO05D002243 4.0e-12 74.3 47 76.6
Solyc08g006510.3 Solanum lycopersicum HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 76.1
Sopen08g002470 Solanum pennellii HOM05D002187 ORTHO05D002243 4.0e-12 74.3 46 76.1
Aqoxy3G03813 Aquilegia oxysepala HOM05D002187 ORTHO05D002243 5.3e-12 73.9 46 76.1
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 5.3e-12 73.9 46 78.3
Eucgr.C01875 Eucalyptus grandis HOM05D002187 ORTHO05D002243 5.3e-12 73.9 46 73.9
Lsat_1_v5_gn_6_15660 Lactuca sativa HOM05D002187 ORTHO05D002243 5.3e-12 73.9 46 76.1
Nn4g23625 Nelumbo nucifera HOM05D002187 ORTHO05D002243 5.3e-12 73.9 46 78.3
BcaB08g37313 Brassica carinata HOM05D002187 ORTHO05D002243 6.9e-12 73.6 46 78.3
Haze_21358 Corylus avellana HOM05D002187 ORTHO05D002243 6.9e-12 73.6 46 78.3
Haze_21364 Corylus avellana HOM05D002187 ORTHO05D002243 6.9e-12 73.6 46 78.3
BcaC04g19289 Brassica carinata HOM05D002187 ORTHO05D002243 9.0e-12 73.2 46 78.3
Migut.A00404 Erythranthe guttata HOM05D002187 ORTHO05D002243 9.0e-12 73.2 46 73.9
GSVIVG01036044001 Vitis vinifera HOM05D002187 ORTHO05D002243 9.0e-12 73.2 46 80.4
ClCG08G013880 Citrullus lanatus HOM05D002187 ORTHO05D002243 1.2e-11 72.8 46 76.1
CsaV3_2G032660 Cucumis sativus L. HOM05D002187 ORTHO05D002243 1.2e-11 72.8 46 76.1
Lj1g0003178 Lotus japonicus HOM05D002187 ORTHO05D002243 1.2e-11 72.8 46 73.9
Manes.16G133500 Manihot esculenta HOM05D002187 ORTHO05D002243 1.2e-11 72.8 46 73.9
TWI63G1524 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 1.2e-11 72.8 46 78.3
Aa31LG3G16380 Aethionema arabicum HOM05D002187 ORTHO05D002243 1.5e-11 72.4 46 76.1
MELO3C011320.2 Cucumis melo HOM05D002187 ORTHO05D002243 1.5e-11 72.4 46 73.9
Rhsim10G0066000 Rhododendron simsii HOM05D002187 ORTHO05D002243 1.5e-11 72.4 46 73.9
CAN.G396.12 Capsicum annuum HOM05D002187 ORTHO05D002243 2.0e-11 72.0 46 71.7
Cc08_g06340 Coffea canephora HOM05D002187 ORTHO05D002243 2.0e-11 72.0 46 76.1
ECA240G0785 Erigeron canadensis HOM05D002187 ORTHO05D002243 2.0e-11 72.0 46 71.7
Ah.10g025010 Amaranthus hybridus HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 71.7
MSTRG.25813 Avicennia marina HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 76.1
Oeu019794.2 Olea europaea HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 76.1
Potri.006G268000 Populus trichocarpa HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 73.9
PGR083G2273 Punica granatum HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 73.9
Sabra18G0017300 Salix brachista HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 73.9
TPR.G6775 Trifolium pratense HOM05D002187 ORTHO05D002243 2.6e-11 71.6 46 76.1
Actinidia36295 Actinidia chinensis HOM05D002187 ORTHO05D002243 3.4e-11 71.2 46 71.7
Cpa.g.sc23.47 Carica papaya HOM05D002187 ORTHO05D002243 3.4e-11 71.2 46 73.9
Thhalv10014285m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 3.4e-11 71.2 46 73.9
HanXRQChr13g0412511 Helianthus annuus HOM05D002187 ORTHO05D002243 3.4e-11 71.2 46 71.7
vmacro05593 Vaccinium macrocarpon HOM05D002187 ORTHO05D002243 3.4e-11 71.2 48 66.7
Duzib150G1169 Durio zibethinus HOM05D002187 ORTHO05D002243 4.5e-11 70.9 46 76.1
FAN27G0807 Fragaria x ananassa HOM05D002187 ORTHO05D002243 4.5e-11 70.9 46 71.7
Medtr3g105660 Medicago truncatula HOM05D002187 ORTHO05D002243 4.5e-11 70.9 46 76.1
Os02g0556100 Oryza sativa ssp. japonica HOM05D002187 ORTHO05D002243 4.5e-11 70.9 46 76.1
RcHm_v2.0_Chr6g0299041 Rosa chinensis HOM05D002187 ORTHO05D002243 4.5e-11 70.9 46 71.7
ATR0691G165 Amborella trichopoda HOM05D002187 ORTHO05D002243 5.8e-11 70.5 46 69.6
Prupe.1G399300 Prunus persica HOM05D002187 ORTHO05D002243 7.6e-11 70.1 46 69.6
MD08G1049300 Malus domestica HOM05D002187 ORTHO05D002243 1.7e-10 68.9 46 69.6
unitig_747.g21899 Utricularia gibba HOM05D002187 ORTHO05D002243 1.7e-10 68.9 45 71.1
Lsat_1_v5_gn_5_62121 Lactuca sativa HOM05D002187 ORTHO05D002243 2.2e-10 68.6 46 67.4
PSO017G1282 Papaver somniferum HOM05D002187 ORTHO05D002243 2.2e-10 68.6 46 71.7
PSO478G3368 Papaver somniferum HOM05D002187 ORTHO05D002243 2.2e-10 68.6 46 71.7
Ca_00723_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 2.9e-10 68.2 41 78.0
Nitab4.5_0000502g0190 Nicotiana tabacum HOM05D002187 ORTHO05D002243 2.9e-10 68.2 46 69.6
QL02p017682 Quercus lobata HOM05D002187 ORTHO05D002243 2.9e-10 68.2 46 71.7
FAN15G1687 Fragaria x ananassa HOM05D002187 ORTHO05D002243 3.8e-10 67.8 46 69.6
Glyma.U003166 Glycine max HOM05D002187 ORTHO05D002243 3.8e-10 67.8 43 81.4
MD15G1045600 Malus domestica HOM05D002187 ORTHO05D002243 3.8e-10 67.8 46 69.6
Psat0s4637g0040 Pisum sativum HOM05D002187 ORTHO05D002243 3.8e-10 67.8 46 69.6
CANSAT25G0833 Cannabis sativa HOM05D002187 ORTHO05D002243 4.9e-10 67.4 46 71.7
Cfa013000 Carpinus fangiana HOM05D002187 ORTHO05D002243 4.9e-10 67.4 46 69.6
CiPaw.07G234000 Carya illinoinensis HOM05D002187 ORTHO05D002243 4.9e-10 67.4 46 71.7
Potri.004G106300 Populus trichocarpa HOM05D002187 ORTHO05D002243 6.4e-10 67.0 46 65.2
CAN.G808.4 Capsicum annuum HOM05D002187 ORTHO05D000018 2.4e-09 65.1 48 62.5
Cfa007987 Carpinus fangiana HOM05D002187 ORTHO05D002243 2.4e-09 65.1 46 69.6
Haze_14087 Corylus avellana HOM05D002187 ORTHO05D002243 3.2e-09 64.7 46 69.6
Sabra04G0075900 Salix brachista HOM05D002187 ORTHO05D002243 4.2e-09 64.3 46 65.2
Manes.02G064300 Manihot esculenta HOM05D002187 ORTHO05D002243 7.1e-09 63.5 46 65.2
Ciclev10012367m.g Citrus clementina HOM05D002187 ORTHO05D002243 9.3e-09 63.2 46 67.4
Thecc.04G145200 Theobroma cacao HOM05D002187 ORTHO05D002243 9.3e-09 63.2 46 65.2
HPP92_027402 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.6e-08 62.4 46 60.9
HPP92_027411 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.6e-08 62.4 46 60.9
TWI60G0353 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 4.6e-08 60.8 46 58.7
COL.COLO4_38266 Corchorus olitorius HOM05D002187 ORTHO05D002243 6.0e-08 60.5 46 63.0
Atru.chr8.793 Acer truncatum HOM05D002187 ORTHO05D002243 1.8e-07 58.9 46 58.7
Glyma.06G059200 Glycine max HOM05D002187 ORTHO05D002243 1.8e-07 58.9 50 64.0
QL06p040425 Quercus lobata HOM05D002187 ORTHO05D002243 1.8e-07 58.9 45 62.2
Eucgr.C01613 Eucalyptus grandis HOM05D002187 ORTHO05D002243 3.9e-07 57.8 48 56.2
Mapoly0114s0058 Marchantia polymorpha HOM05D002187 ORTHO05D002243 6.7e-07 57.0 48 52.1
SEGI_18253 Sequoiadendron giganteum HOM05D002187 ORTHO05D002243 1.9e-06 55.5 48 52.1
THA.LOC104820963 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 4.3e-06 54.3 47 66.0
Eucgr.C01871 Eucalyptus grandis HOM05D000109 ORTHO05D000210 9.6e-06 53.1 44 56.8


User provided reference genes

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