Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007523 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D111461 3.7e-123 444.9 225 100.0
CSS0016513 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D112824 1.1e-13 81.3 128 46.1
CSS0023667 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 1.1e-13 81.3 65 66.2
Rhsim07G0162300 Rhododendron simsii HOM05D001021 ORTHO05D000894 1.4e-13 80.9 79 55.7
Actinidia13208 Actinidia chinensis HOM05D001021 ORTHO05D000894 3.1e-13 79.7 62 67.7
Actinidia14108 Actinidia chinensis HOM05D001021 ORTHO05D000894 3.1e-13 79.7 79 55.7
Dinv03422 Davidia involucrata HOM05D001021 ORTHO05D000894 3.1e-13 79.7 79 55.7
Glyma.17G216000 Glycine max HOM05D001021 ORTHO05D000894 4.1e-13 79.3 49 79.6
TPR.G38865 Trifolium pratense HOM05D001021 ORTHO05D000894 4.1e-13 79.3 49 79.6
Dinv06491 Davidia involucrata HOM05D001021 ORTHO05D000894 5.3e-13 79.0 79 55.7
Cfa013093 Carpinus fangiana HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
CiPaw.08G007800 Carya illinoinensis HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Haze_21450 Corylus avellana HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Duzib168G0044 Durio zibethinus HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Eucgr.C02720 Eucalyptus grandis HOM05D001021 ORTHO05D000894 7.0e-13 78.6 65 63.1
Gohir.D06G102400 Gossypium hirsutum HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Gorai.010G117400 Gossypium raimondii HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Lj5g0012884 Lotus japonicus HOM05D001021 ORTHO05D000894 7.0e-13 78.6 62 66.1
Peaxi162Scf00116g00313 Petunia axillaris HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 54.4
Prupe.1G390500 Prunus persica HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
Thecc.09G018600 Theobroma cacao HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 55.7
vmacro05147 Vaccinium macrocarpon HOM05D001021 ORTHO05D000894 7.0e-13 78.6 79 54.4
CiPaw.07G227500 Carya illinoinensis HOM05D001021 ORTHO05D000894 9.1e-13 78.2 79 55.7
ClCG08G013590 Citrullus lanatus HOM05D001021 ORTHO05D000894 9.1e-13 78.2 65 61.5
CsaV3_2G032340 Cucumis sativus L. HOM05D001021 ORTHO05D000894 9.1e-13 78.2 65 61.5
Lj7C729T7 Lonicera japonica HOM05D001021 ORTHO05D000894 9.1e-13 78.2 79 54.4
Lalb_Chr22g0361431 Lupinus albus HOM05D001021 ORTHO05D000894 9.1e-13 78.2 62 66.1
Gohir.A06G100300 Gossypium hirsutum HOM05D001021 ORTHO05D000894 1.2e-12 77.8 62 66.1
GSVIVG01035914001 Vitis vinifera HOM05D001021 ORTHO05D000894 1.6e-12 77.4 79 55.7
Ca_13048_v3 Cicer arietinum L. HOM05D001021 ORTHO05D000894 2.0e-12 77.0 62 64.5
DCAR_003005 Daucus carota HOM05D001021 ORTHO05D000894 2.0e-12 77.0 65 63.1
FAN20G0577 Fragaria x ananassa HOM05D001021 ORTHO05D000894 2.0e-12 77.0 52 71.2
Manes.16G126700 Manihot esculenta HOM05D001021 ORTHO05D000894 2.0e-12 77.0 79 53.2
Medtr1g013050 Medicago truncatula HOM05D001021 ORTHO05D000894 2.0e-12 77.0 62 64.5
Potri.006G260200 Populus trichocarpa HOM05D001021 ORTHO05D000894 2.0e-12 77.0 79 54.4
Glyma.14G111800 Glycine max HOM05D001021 ORTHO05D000894 2.6e-12 76.6 82 54.9
Gohir.A05G057300 Gossypium hirsutum HOM05D001021 ORTHO05D000894 2.6e-12 76.6 79 54.4
Nitab4.5_0000486g0030 Nicotiana tabacum HOM05D001021 ORTHO05D000894 2.6e-12 76.6 79 51.9
Nitab4.5_0009538g0010 Nicotiana tabacum HOM05D001021 ORTHO05D000894 2.6e-12 76.6 79 51.9
Phvul.001G047001 Phaseolus vulgaris HOM05D001021 ORTHO05D000894 2.6e-12 76.6 62 66.1
RcHm_v2.0_Chr6g0299821 Rosa chinensis HOM05D001021 ORTHO05D000894 2.6e-12 76.6 52 71.2
Atru.chr7.2508 Acer truncatum HOM05D001021 ORTHO05D000894 3.5e-12 76.3 65 60.0
CANSAT25G2285 Cannabis sativa HOM05D001021 ORTHO05D000894 3.5e-12 76.3 65 60.0
Cpa.g.sc532.4 Carica papaya HOM05D001021 ORTHO05D000894 3.5e-12 76.3 65 61.5
MELO3C011284.2 Cucumis melo HOM05D001021 ORTHO05D000894 3.5e-12 76.3 65 60.0
CAN.G6.30 Capsicum annuum HOM05D001021 ORTHO05D000894 4.5e-12 75.9 65 56.9
HanXRQChr02g0050121 Helianthus annuus HOM05D001021 ORTHO05D000894 4.5e-12 75.9 65 58.5
MD08G1060300 Malus domestica HOM05D001021 ORTHO05D000894 4.5e-12 75.9 79 54.4
Oeu012639.1 Olea europaea HOM05D001021 ORTHO05D000894 4.5e-12 75.9 79 54.4
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.9e-12 75.5 50 76.0
FvH4_2g40770 Fragaria vesca HOM05D001021 ORTHO05D000894 5.9e-12 75.5 52 69.2
Potri.018G022200 Populus trichocarpa HOM05D001021 ORTHO05D000894 5.9e-12 75.5 79 54.4
Sabra06G0203200 Salix brachista HOM05D001021 ORTHO05D000894 5.9e-12 75.5 65 60.0
SabraUnG0004900 Salix brachista HOM05D001021 ORTHO05D000894 5.9e-12 75.5 65 60.0
PGSC0003DMG400029897 Solanum tuberosum HOM05D001021 ORTHO05D000894 5.9e-12 75.5 65 55.4
Atru.chr7.2509 Acer truncatum HOM05D001021 ORTHO05D000894 7.7e-12 75.1 52 71.2
Aqoxy7G03508 Aquilegia oxysepala HOM05D001021 ORTHO05D000894 7.7e-12 75.1 79 54.4
COL.COLO4_18928 Corchorus olitorius HOM05D001021 ORTHO05D000894 7.7e-12 75.1 79 53.2
VMungo0647G0368 Vigna mungo HOM05D001021 ORTHO05D000894 7.7e-12 75.1 49 75.5
Aa31LG2G18060 Aethionema arabicum HOM05D001021 ORTHO05D000894 1.0e-11 74.7 65 56.9
AL7G19900 Arabidopsis lyrata HOM05D001021 ORTHO05D000894 1.0e-11 74.7 61 63.9
AT4G31990 Arabidopsis thaliana HOM05D001021 ORTHO05D000894 1.0e-11 74.7 61 63.9
arahy.Tifrunner.gnm1.ann1.6D88CF Arachis hypogaea HOM05D001021 ORTHO05D000894 1.0e-11 74.7 62 61.3
Cc08_g00120 Coffea canephora HOM05D001021 ORTHO05D000894 1.0e-11 74.7 62 64.5
Lsat_1_v5_gn_6_18741 Lactuca sativa HOM05D001021 ORTHO05D000894 1.0e-11 74.7 65 55.4
TPR.G28210 Trifolium pratense HOM05D001021 ORTHO05D000894 1.0e-11 74.7 61 62.3
arahy.Tifrunner.gnm1.ann1.6D6Z2R Arachis hypogaea HOM05D001021 ORTHO05D000894 1.3e-11 74.3 62 59.7
Nn8g39753 Nelumbo nucifera HOM05D001021 ORTHO05D000894 1.3e-11 74.3 79 53.2
QL02p020044 Quercus lobata HOM05D001021 ORTHO05D000894 1.3e-11 74.3 65 58.5
HanXRQChr13g0403701 Helianthus annuus HOM05D001021 ORTHO05D000894 1.7e-11 73.9 65 56.9
Hund03475 Selenicereus undatus HOM05D001021 ORTHO05D000894 1.7e-11 73.9 79 51.9
Carub.0007s0856 Capsella rubella HOM05D001021 ORTHO05D000894 2.2e-11 73.6 61 62.3
Ciclev10008224m.g Citrus clementina HOM05D001021 ORTHO05D000894 2.2e-11 73.6 79 51.9
Gohir.D05G059400 Gossypium hirsutum HOM05D001021 ORTHO05D000894 2.2e-11 73.6 79 53.2
Gorai.009G060500 Gossypium raimondii HOM05D001021 ORTHO05D000894 2.2e-11 73.6 79 53.2
MSTRG.26034 Avicennia marina HOM05D001021 ORTHO05D000894 2.9e-11 73.2 79 51.9
Mapoly0001s0131 Marchantia polymorpha HOM05D001021 ORTHO05D000894 2.9e-11 73.2 49 73.5
ATR0629G123 Amborella trichopoda HOM05D001021 ORTHO05D000894 3.8e-11 72.8 62 61.3
CSS0017064 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D111070 3.8e-11 72.8 118 44.9
FAN27G2611 Fragaria x ananassa HOM05D001021 ORTHO05D000894 3.8e-11 72.8 48 70.8
PSO017G0911 Papaver somniferum HOM05D001021 ORTHO05D000894 3.8e-11 72.8 62 61.3
PSO170G2518 Papaver somniferum HOM05D001021 ORTHO05D000894 3.8e-11 72.8 62 61.3
CARHR239890 Cardamine hirsuta HOM05D001021 ORTHO05D000894 5.0e-11 72.4 61 60.7
Psat6g028680 Pisum sativum HOM05D001021 ORTHO05D000894 5.0e-11 72.4 62 61.3
TAR383G0185 Trochodendron aralioides HOM05D001021 ORTHO05D000894 5.0e-11 72.4 79 53.2
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.5e-11 72.0 50 74.0
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.5e-11 72.0 50 74.0
AUR62031576 Chenopodium quinoa HOM05D001021 ORTHO05D000894 6.5e-11 72.0 79 51.9
Migut.A00003 Erythranthe guttata HOM05D001021 ORTHO05D000894 6.5e-11 72.0 65 58.5
PGR044G0835 Punica granatum HOM05D001021 ORTHO05D000894 6.5e-11 72.0 62 59.7
Solyc08g041870.3 Solanum lycopersicum HOM05D001021 ORTHO05D000894 6.5e-11 72.0 65 53.8
Sopen08g012080 Solanum pennellii HOM05D001021 ORTHO05D000894 6.5e-11 72.0 65 53.8
TWI32G1085 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 6.5e-11 72.0 97 46.4
TWI34G0456 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 6.5e-11 72.0 97 46.4
ECA233G0719 Erigeron canadensis HOM05D001021 ORTHO05D000894 8.5e-11 71.6 65 55.4
Sc23g0006500 Simmondsia chinensis HOM05D001021 ORTHO05D000894 8.5e-11 71.6 79 49.4
BcaC09g51988 Brassica carinata HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
A01p06290 Brassica napus HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
A03p61170 Brassica napus HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
C07p59030 Brassica napus HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
BolC1t00690H Brassica oleracea HOM05D001021 ORTHO05D002396 1.1e-10 71.2 61 59.0
BolC7t46351H Brassica oleracea HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
BraA01t00596Z Brassica rapa HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
BraA03t15155Z Brassica rapa HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
BraA03t15161Z Brassica rapa HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
Thhalv10025142m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 1.1e-10 71.2 61 59.0
AagrBONN_evm.TU.Sc2ySwM_362.291 Anthoceros agrestis HOM05D001021 ORTHO05D000894 1.5e-10 70.9 49 73.5
SGA_v2.0_scaffold64G22016 Striga asiatica HOM05D001021 ORTHO05D000894 1.5e-10 70.9 79 49.4
C01p06930 Brassica napus HOM05D001021 ORTHO05D000894 1.9e-10 70.5 61 59.0
EL10Ac2g04148 Beta vulgaris HOM05D001021 ORTHO05D000894 2.5e-10 70.1 79 49.4
SalBow4G0104 Salvia bowleyana HOM05D001021 ORTHO05D000894 2.5e-10 70.1 52 65.4
Sp7g29790 Schrenkiella parvula HOM05D001021 ORTHO05D000894 2.5e-10 70.1 61 59.0
THA.LOC104804501 Tarenaya hassleriana HOM05D001021 ORTHO05D000894 2.5e-10 70.1 79 50.6
unitig_32.g10891 Utricularia gibba HOM05D001021 ORTHO05D000894 2.5e-10 70.1 79 48.1
SMO147G0162 Selaginella moellendorffii HOM05D001021 ORTHO05D000894 7.2e-10 68.6 49 67.3
Os02g0797500 Oryza sativa ssp. japonica HOM05D001021 ORTHO05D000894 9.4e-10 68.2 65 55.4
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.2e-09 67.8 45 75.6
Pp3c1_20690 Physcomitrium patens HOM05D001021 ORTHO05D000894 1.2e-09 67.8 49 69.4
Sed0007080 Sechium edule HOM05D001021 ORTHO05D000894 1.2e-09 67.8 97 44.3
Pp3c10_1870 Physcomitrium patens HOM05D001021 ORTHO05D000894 2.1e-09 67.0 66 54.5
unitig_748.g8262 Utricularia gibba HOM05D001021 ORTHO05D000894 3.6e-09 66.2 79 45.6
HPP92_018515 Vanilla planifolia HOM05D001021 ORTHO05D000894 3.6e-09 66.2 97 44.3
Zm00001eb257910 Zea mays HOM05D001021 ORTHO05D000894 1.4e-08 64.3 62 56.5
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.8e-08 63.9 61 62.3
BcaNung03127 Brassica carinata HOM05D001021 ORTHO05D000894 2.3e-08 63.5 62 56.5
CSS0020093 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D110648 3.0e-08 63.2 131 40.5
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 8.8e-08 61.6 52 63.5
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.1e-07 61.2 61 60.7
Cre02.g097900 Chlamydomonas reinhardtii HOM05D001021 ORTHO05D000894 5.7e-07 58.9 45 60.0
PRCOL_00003289 Prasinoderma coloniale HOM05D001021 ORTHO05D000894 8.2e-06 55.1 46 60.9


User provided reference genes

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