Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007512 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 3.7e-79 298.1 148 100.0
CSS0005469 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.0e-68 261.2 147 89.8
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.2e-25 118.2 134 49.3
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.2e-25 118.2 134 49.3
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 4.1e-22 108.6 135 44.4
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 7.0e-22 107.8 140 44.3
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 9.2e-22 107.5 140 44.3
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.6e-21 106.7 140 44.3
Rhsim08G0065500 Rhododendron simsii HOM05D008333 ORTHO05D010371 4.6e-21 105.1 141 43.3
Rhsim08G0065900 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.3e-20 103.6 141 43.3
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.7e-20 103.2 140 44.3
Rhsim08G0065000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.5e-19 100.1 138 42.8
Rhsim08G0065600 Rhododendron simsii HOM05D008333 ORTHO05D010371 4.3e-19 98.6 129 44.2
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 5.6e-19 98.2 140 41.4
Rhsim08G0065200 Rhododendron simsii HOM05D008333 ORTHO05D010371 6.2e-18 94.7 129 42.6
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 8.9e-17 90.9 140 40.0
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 1.7e-15 86.7 120 40.0
PGSC0003DMG400016257 Solanum tuberosum HOM05D008333 ORTHO05D010371 5.4e-14 81.6 110 44.5
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 9.2e-14 80.9 138 37.0
Lj7P401T71 Lonicera japonica HOM05D008333 ORTHO05D010371 2.7e-13 79.3 142 37.3
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 3.0e-12 75.9 145 33.1
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 3.0e-12 75.9 145 33.1
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 1.9e-11 73.2 145 33.1
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.9e-11 73.2 145 33.1
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 2.5e-11 72.8 145 33.1
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 9.5e-11 70.9 136 34.6
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 1.2e-10 70.5 144 35.4
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 2.1e-10 69.7 115 35.7
TAR481G0008 Trochodendron aralioides HOM05D008333 ORTHO05D010371 3.6e-10 68.9 135 31.9
TAR481G0013 Trochodendron aralioides HOM05D008333 ORTHO05D010371 3.6e-10 68.9 126 32.5
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 8.1e-10 67.8 102 40.2
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 8.1e-10 67.8 127 37.8
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 3.1e-09 65.9 135 31.1
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 5.2e-09 65.1 131 35.1
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 6.8e-09 64.7 104 36.5
Lsat_1_v5_gn_4_179800 Lactuca sativa HOM05D019919 ORTHO05D010371 1.5e-08 63.5 104 33.7
Cfa007508 Carpinus fangiana HOM05D008333 ORTHO05D010371 2.6e-08 62.8 139 30.9
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 4.4e-08 62.0 131 34.4
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 4.4e-08 62.0 136 31.6
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 7.6e-08 61.2 129 34.9
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 1.7e-07 60.1 133 33.1
Lsat_1_v5_gn_4_179820 Lactuca sativa HOM05D019919 ORTHO05D010371 1.7e-07 60.1 104 33.7
Sopen04g006510 Solanum pennellii HOM05D008333 ORTHO05D010371 1.7e-07 60.1 102 33.3
Gohir.A11G265601 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.9e-07 59.3 99 34.3
Gorai.007G297900 Gossypium raimondii HOM05D008333 ORTHO05D010371 4.9e-07 58.5 122 31.1
Nn4g23042 Nelumbo nucifera HOM05D008333 ORTHO05D010371 4.9e-07 58.5 120 30.8
Gohir.D11G275775 Gossypium hirsutum HOM05D008333 ORTHO05D010371 6.4e-07 58.2 122 31.1
Gorai.006G023800 Gossypium raimondii HOM05D008333 ORTHO05D010371 6.4e-07 58.2 113 33.6
Nn3g17126 Nelumbo nucifera HOM05D008333 ORTHO05D010371 6.4e-07 58.2 90 33.3
HanXRQChr09g0265591 Helianthus annuus HOM05D019919 ORTHO05D010371 8.4e-07 57.8 77 40.3
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 1.4e-06 57.0 136 29.4
TPR.G7262 Trifolium pratense HOM05D008333 ORTHO05D010371 9.2e-06 54.3 133 29.3


User provided reference genes

Program Settings