Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.2e-42 175.3 90 100.0
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.3e-39 166.0 90 96.7
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 4.6e-16 87.8 70 70.0
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 3.9e-15 84.7 67 71.6
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 8.7e-15 83.6 91 58.2
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.9e-14 82.4 87 58.6
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 3.3e-14 81.6 87 57.5
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 1.2e-13 79.7 92 52.2
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-13 79.7 70 67.1
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.2e-13 79.7 70 67.1
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.6e-13 78.2 89 55.1
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.6e-13 78.2 89 55.1
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 3.6e-13 78.2 89 55.1
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 8.1e-13 77.0 68 64.7
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 2.0e-11 72.4 71 57.7
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 2.6e-11 72.0 87 52.9
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 9.9e-11 70.1 72 58.3
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.4e-09 66.2 83 50.6
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.4e-09 66.2 73 53.4
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 1.9e-09 65.9 69 58.0
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.9e-09 65.9 73 53.4
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 3.2e-09 65.1 68 55.9
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.2e-09 64.7 63 60.3
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 4.2e-09 64.7 74 55.4
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 9.3e-09 63.5 63 58.7
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 3.5e-08 61.6 60 61.7
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.5e-08 61.6 85 48.2
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 3.5e-08 61.6 84 52.4
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 6.0e-08 60.8 68 60.3
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 7.8e-08 60.5 68 58.8
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 7.8e-08 60.5 68 55.9
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 1.0e-07 60.1 72 50.0
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 1.0e-07 60.1 73 50.7
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.3e-07 59.7 63 58.7
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 1.3e-07 59.7 81 51.9
Hma1.2p1_0031F.1_g018580 Hydrangea macrophylla HOM05D007313 ORTHO05D005299 1.3e-07 59.7 82 50.0
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 1.3e-07 59.7 89 51.7
Lsat_1_v5_gn_4_12541 Lactuca sativa HOM05D007313 ORTHO05D005299 1.7e-07 59.3 82 45.1
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 1.7e-07 59.3 84 50.0
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 1.7e-07 59.3 70 51.4
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.7e-07 59.3 73 56.2
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 1.7e-07 59.3 59 59.3
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 2.3e-07 58.9 83 49.4
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 2.3e-07 58.9 66 54.5
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 3.0e-07 58.5 59 59.3
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 3.0e-07 58.5 59 59.3
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 3.9e-07 58.2 59 59.3
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 3.9e-07 58.2 59 59.3
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 3.9e-07 58.2 69 49.3
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 5.1e-07 57.8 74 51.4
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 59.3
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 59.3
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 59.3
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 59.3
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 59.3
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 6.6e-07 57.4 65 58.5
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 8.7e-07 57.0 96 42.7
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 8.7e-07 57.0 65 55.4
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 8.7e-07 57.0 68 52.9
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 8.7e-07 57.0 78 46.2
CiPaw.06G051300 Carya illinoinensis HOM05D007313 ORTHO05D005299 1.9e-06 55.8 73 53.4
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.9e-06 55.8 70 50.0
VMungo0540G1213 Vigna mungo HOM05D007313 ORTHO05D005299 1.9e-06 55.8 69 52.2
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 2.5e-06 55.5 59 57.6
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 2.5e-06 55.5 59 57.6
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 2.5e-06 55.5 59 57.6
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 2.5e-06 55.5 86 48.8
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 3.3e-06 55.1 59 55.9
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 3.3e-06 55.1 63 57.1
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 3.3e-06 55.1 70 48.6
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 3.3e-06 55.1 62 58.1
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 4.3e-06 54.7 65 52.3
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 4.3e-06 54.7 66 50.0
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 5.6e-06 54.3 66 50.0
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 7.3e-06 53.9 59 55.9
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 7.3e-06 53.9 59 55.9
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 7.3e-06 53.9 59 55.9
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 7.3e-06 53.9 73 53.4
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 7.3e-06 53.9 59 55.9
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 7.3e-06 53.9 62 54.8
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 9.6e-06 53.5 59 55.9
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 9.6e-06 53.5 74 47.3
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 9.6e-06 53.5 78 44.9


User provided reference genes

Program Settings