Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 0.0e+00 1171.8 645 100.0
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 0.0e+00 1153.7 645 94.6
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.6e-248 862.8 586 81.4
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.0e-218 763.8 517 80.3
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 1.8e-218 763.1 578 73.7
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 7.4e-217 757.7 577 71.9
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 4.5e-214 748.4 579 71.8
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 1.3e-213 746.9 575 71.5
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 6.5e-213 744.6 576 70.3
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.4e-212 743.4 579 71.2
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.0e-210 737.3 575 70.1
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 4.8e-208 728.4 580 69.3
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 1.1e-207 727.2 572 70.6
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 5.3e-207 724.9 589 68.1
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 3.4e-206 722.2 614 67.1
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 1.0e-205 720.7 577 69.3
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 2.2e-205 719.5 583 68.1
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 3.8e-205 718.8 575 67.5
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 8.5e-205 717.6 600 66.3
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 8.5e-205 717.6 600 66.3
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 1.4e-204 716.8 575 69.0
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 7.2e-204 714.5 579 67.7
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 9.4e-204 714.1 579 67.7
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 9.4e-204 714.1 492 76.8
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 2.1e-203 713.0 579 67.7
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.0e-202 710.7 579 68.2
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 1.8e-202 709.9 646 64.1
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 1.8e-202 709.9 587 67.5
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 2.3e-202 709.5 509 74.3
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 5.1e-202 708.4 547 69.3
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 3.3e-201 705.7 592 67.1
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 9.7e-201 704.1 589 67.1
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 2.2e-200 703.0 554 69.5
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 2.4e-199 699.5 579 67.4
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 1.5e-198 696.8 577 66.4
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 1.3e-197 693.7 581 64.9
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 1.7e-197 693.3 595 66.4
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 8.5e-197 691.0 585 65.1
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 1.1e-196 690.6 580 64.5
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 3.2e-196 689.1 566 69.1
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 5.5e-196 688.3 579 65.1
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 9.4e-196 687.6 495 73.3
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 4.7e-195 685.3 580 65.2
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 1.7e-192 676.8 577 65.7
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.6e-190 670.2 653 61.7
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 2.0e-190 669.8 504 70.6
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 2.6e-190 669.5 543 68.3
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 4.5e-190 668.7 486 70.4
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 1.3e-189 667.2 582 65.5
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 1.1e-188 664.1 508 67.9
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 1.1e-188 664.1 547 64.0
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 3.2e-188 662.5 572 64.0
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 4.2e-188 662.1 507 67.7
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 7.2e-188 661.4 578 63.7
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 1.6e-187 660.2 513 67.1
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 2.7e-187 659.4 513 67.3
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 6.1e-187 658.3 507 67.9
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 1.0e-186 657.5 505 67.5
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 4.0e-186 655.6 507 67.3
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 1.2e-185 654.1 539 67.5
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 2.0e-185 653.3 513 65.9
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 2.0e-185 653.3 605 61.7
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 2.6e-185 652.9 620 63.5
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 5.7e-185 651.7 579 63.6
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 1.3e-184 650.6 586 62.3
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 4.8e-184 648.7 528 65.2
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 1.4e-183 647.1 505 67.5
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 1.2e-182 644.0 574 61.3
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 1.2e-182 644.0 439 77.0
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 3.5e-182 642.5 526 65.0
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 2.1e-179 633.3 463 73.0
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 1.0e-178 630.9 583 61.6
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 2.6e-177 626.3 578 61.2
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 3.7e-176 622.5 588 61.1
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 6.1e-171 605.1 483 66.3
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 1.0e-170 604.4 549 63.2
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 4.4e-169 599.0 605 57.7
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 9.8e-169 597.8 603 57.5
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 2.2e-168 596.7 588 58.0
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 1.6e-166 590.5 596 60.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.3e-165 587.4 568 61.3
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.6e-163 580.5 537 60.1
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 7.5e-161 571.6 492 62.0
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 1.0e-157 561.2 488 63.1
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.7e-157 560.5 542 60.1
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 8.6e-157 558.1 548 60.8
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 7.5e-153 545.0 516 60.5
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 4.9e-152 542.3 492 61.4
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 1.3e-144 517.7 494 57.3
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 7.8e-142 508.4 496 54.4
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 1.6e-139 500.7 316 81.6
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 1.5e-132 477.6 317 76.0
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 6.9e-130 468.8 489 49.9
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 5.4e-127 459.1 495 50.5
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 6.7e-117 425.6 419 58.0
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 2.6e-97 360.5 516 43.4
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 5.3e-82 309.7 230 71.7
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 1.7e-59 235.0 533 33.2
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 1.1e-58 232.3 280 53.6
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.0e-57 228.0 199 57.3
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 3.8e-56 223.8 262 53.4
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 2.1e-54 218.0 236 51.3
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.6e-52 211.1 283 50.9
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.7e-51 207.2 201 55.2
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.4e-50 205.3 174 60.9
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 2.3e-48 198.0 141 76.6
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 1.2e-41 175.6 172 59.9
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 6.8e-37 159.8 244 46.3
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.1e-30 138.3 111 69.4
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 1.1e-21 109.4 71 87.3
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.1e-15 89.4 58 82.8
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 7.8e-09 66.6 117 34.2
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 1.7e-08 65.5 117 33.3


User provided reference genes

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