Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.0e-246 854.7 438 100.0
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 2.1e-191 672.5 437 80.8
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 3.2e-179 632.1 441 76.2
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 2.7e-178 629.0 443 74.7
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.9e-168 596.3 439 74.3
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 4.3e-168 595.1 437 72.3
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.3e-159 567.0 442 68.1
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.1e-159 566.2 439 72.7
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 8.1e-159 564.3 437 72.5
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 9.3e-155 550.8 442 66.3
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 9.3e-155 550.8 441 65.5
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 9.3e-155 550.8 441 68.9
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 1.6e-154 550.1 441 68.7
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 3.5e-154 548.9 441 65.5
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 1.0e-153 547.4 441 65.5
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 1.9e-152 543.1 441 68.5
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 1.9e-152 543.1 441 66.7
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 3.3e-152 542.3 441 68.7
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 7.4e-152 541.2 445 65.2
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 9.6e-152 540.8 439 65.1
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 1.1e-150 537.3 441 66.0
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 2.4e-150 536.2 445 65.8
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.3e-150 535.0 446 65.2
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 6.9e-150 534.6 443 63.7
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 1.7e-148 530.0 466 61.8
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 6.7e-145 518.1 431 64.3
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 5.7e-144 515.0 442 61.3
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 5.7e-144 515.0 445 64.0
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.8e-143 511.9 444 61.3
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 6.3e-143 511.5 443 62.5
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 8.2e-143 511.1 444 64.0
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.8e-142 510.0 444 60.8
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 5.3e-142 508.4 437 63.8
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 5.3e-142 508.4 443 61.4
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 2.0e-141 506.5 261 98.9
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 3.4e-141 505.8 444 60.6
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.5e-141 505.4 443 60.9
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 4.5e-141 505.4 679 47.0
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 1.0e-140 504.2 441 62.1
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.7e-140 503.4 443 60.9
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 6.5e-140 501.5 446 62.1
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 8.5e-140 501.1 444 59.9
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 1.1e-139 500.7 444 62.2
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 1.4e-139 500.4 441 60.5
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 3.2e-139 499.2 442 60.9
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 4.6e-138 495.4 437 61.1
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 3.9e-137 492.3 330 78.8
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 1.1e-136 490.7 441 60.3
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 1.5e-136 490.3 445 60.9
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.5e-136 490.3 465 57.6
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.5e-136 490.3 458 58.1
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 2.0e-136 490.0 441 61.2
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 3.3e-136 489.2 441 59.9
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 4.3e-136 488.8 422 64.0
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 1.3e-135 487.3 466 57.5
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 2.8e-135 486.1 440 60.2
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 2.8e-135 486.1 441 59.4
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 4.8e-135 485.3 438 61.2
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 6.3e-135 485.0 444 59.2
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 1.1e-134 484.2 442 58.4
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 1.1e-134 484.2 441 61.9
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 2.4e-134 483.0 443 59.4
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 3.1e-134 482.6 444 59.2
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 4.1e-134 482.3 443 59.6
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 1.2e-133 480.7 441 59.4
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 1.2e-133 480.7 444 58.8
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 2.6e-133 479.6 443 59.4
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 3.4e-133 479.2 444 58.1
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 5.9e-133 478.4 442 60.6
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 1.0e-132 477.6 443 59.4
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 1.3e-132 477.2 444 60.4
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 2.9e-132 476.1 441 59.4
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 8.5e-132 474.6 442 59.5
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 3.2e-131 472.6 448 58.7
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.7e-130 469.5 445 58.0
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 7.9e-130 468.0 440 58.0
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 1.4e-129 467.2 445 58.2
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 2.3e-129 466.5 442 59.3
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 8.8e-129 464.5 442 58.1
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.0e-128 463.4 442 59.3
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 3.3e-128 462.6 445 58.0
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 4.4e-128 462.2 470 57.0
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 5.7e-128 461.8 443 57.8
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 5.7e-128 461.8 446 57.4
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.4e-126 457.2 442 57.7
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 5.3e-126 455.3 442 57.9
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 9.1e-126 454.5 440 58.2
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 1.2e-125 454.1 440 58.0
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.5e-125 453.8 442 57.2
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 2.0e-125 453.4 442 55.7
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 3.5e-125 452.6 445 55.3
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 7.7e-125 451.4 440 56.4
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 1.0e-124 451.1 441 56.9
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 2.2e-124 449.9 442 57.5
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 3.8e-124 449.1 441 57.8
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.8e-124 449.1 445 56.6
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 5.0e-124 448.7 444 54.7
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 1.5e-123 447.2 449 57.7
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 2.5e-123 446.4 493 53.5
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 9.4e-123 444.5 438 57.5
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 8.0e-122 441.4 445 58.9
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 1.8e-121 440.3 417 59.5
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 3.0e-121 439.5 417 59.5
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 8.8e-121 438.0 445 52.8
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 2.6e-120 436.4 441 53.7
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 4.4e-120 435.6 447 53.5
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 7.4e-120 434.9 444 53.8
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 1.0e-116 424.5 442 56.6
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 6.5e-116 421.8 442 52.5
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 5.5e-115 418.7 444 51.4
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 2.7e-114 416.4 440 53.2
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 8.0e-114 414.8 454 51.8
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 8.0e-114 414.8 441 54.6
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 3.0e-113 412.9 445 56.6
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 2.0e-112 410.2 437 57.4
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 3.4e-112 409.5 443 55.3
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 3.4e-112 409.5 425 55.3
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 5.7e-112 408.7 470 51.9
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 5.7e-112 408.7 441 53.5
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 2.2e-111 406.8 438 55.0
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.0e-108 397.9 438 54.3
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 3.8e-108 396.0 326 64.4
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 6.5e-108 395.2 439 51.7
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 5.5e-107 392.1 496 46.8
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 1.2e-106 391.0 418 52.4
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 1.6e-101 374.0 440 50.0
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 2.7e-101 373.2 443 54.2
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 1.6e-98 364.0 442 48.0
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 8.3e-95 351.7 446 50.4
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 4.3e-91 339.3 417 48.7
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.3e-87 327.8 415 49.6
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 3.7e-87 326.2 442 44.3
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 1.2e-85 321.2 341 54.0
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 2.3e-84 317.0 447 46.8
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 3.9e-84 316.2 341 51.0
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 9.5e-83 311.6 447 45.9
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 9.5e-83 311.6 439 44.6
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 1.2e-82 311.2 449 47.0
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 8.1e-82 308.5 450 47.1
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 4.0e-81 306.2 421 46.6
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 2.0e-80 303.9 455 45.7
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 1.7e-76 290.8 445 41.8
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 3.6e-74 283.1 438 41.3
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 4.1e-70 269.6 277 52.7
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 1.0e-68 265.0 282 53.5
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.5e-67 260.4 439 39.0
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 3.1e-65 253.4 447 39.1
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.5e-64 251.1 448 41.5
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.8e-63 246.5 447 38.7
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 1.4e-62 244.6 428 39.7
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.2e-61 241.5 447 38.5
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 1.3e-58 231.5 177 65.0
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 9.0e-57 225.3 422 40.3
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 4.4e-56 223.0 422 40.0
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 4.9e-55 219.5 422 39.1
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 4.9e-55 219.5 422 39.1
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 6.4e-55 219.2 460 36.7
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 4.6e-53 213.0 451 38.4
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 6.0e-53 212.6 421 38.7
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 4.0e-49 199.9 299 43.1
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 4.0e-49 199.9 299 43.1
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 2.1e-45 187.6 436 36.9
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.1e-43 181.8 262 44.3
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 7.4e-43 179.1 432 36.8
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 2.2e-39 167.5 441 32.9
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 2.2e-39 167.5 435 31.7
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 2.9e-39 167.2 439 32.6
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 1.8e-36 157.9 428 32.5
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 7.4e-35 152.5 438 29.5
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.0e-32 144.4 126 60.3
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 4.6e-29 133.3 314 34.1
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 2.6e-24 117.5 117 55.6
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 2.6e-24 117.5 101 59.4
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 3.8e-23 113.6 231 34.2
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 2.3e-20 104.4 460 26.1
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.5e-19 100.9 136 43.4
Oeu024206.1 Olea europaea HOM05D000001 ORTHO05D004044 1.4e-14 85.1 144 40.3
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 7.2e-14 82.8 175 37.1
Oeu024205.1 Olea europaea HOM05D007843 ORTHO05D003639 5.3e-09 66.6 55 60.0
Solyc08g061455.1 Solanum lycopersicum HOM05D000001 ORTHO05D004044 7.0e-09 66.2 89 44.9
SHI17133 Sapria himalayana HOM05D000001 ORTHO05D004044 3.5e-08 63.9 79 40.5
MCO09G693 Micromonas commoda HOM05D000001 ORTHO05D004044 5.9e-08 63.2 231 27.7
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 7.7e-08 62.8 75 44.0
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 5.0e-07 60.1 125 37.6


User provided reference genes

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