Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.0e-46 188.7 94 100.0
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 1.8e-34 149.1 83 92.8
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.1e-19 99.0 89 60.7
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 1.1e-17 93.2 79 64.6
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 6.9e-15 84.0 80 55.0
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.5e-14 82.8 66 60.6
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 2.6e-14 82.0 76 59.2
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 4.5e-14 81.3 60 65.0
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 1.3e-13 79.7 78 55.1
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.3e-13 79.7 77 59.7
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.3e-13 79.7 76 57.9
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.3e-13 79.7 56 62.5
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.9e-13 78.6 85 54.1
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 6.5e-13 77.4 75 52.0
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 8.5e-13 77.0 80 55.0
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.1e-12 76.6 78 50.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.1e-12 76.6 74 54.1
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-12 76.3 78 48.7
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.4e-12 76.3 77 54.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.9e-12 75.9 73 54.8
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.9e-12 75.9 75 53.3
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 3.2e-12 75.1 73 53.4
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.2e-12 75.1 81 48.1
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.2e-12 75.1 90 51.1
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 7.2e-12 73.9 83 48.2
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 9.4e-12 73.6 79 46.8
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 9.4e-12 73.6 78 53.8
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.2e-11 73.2 75 54.7
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.6e-11 72.8 84 50.0
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.6e-11 72.8 73 52.1
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 2.1e-11 72.4 74 56.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 2.1e-11 72.4 85 50.6
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 2.1e-11 72.4 83 49.4
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 2.7e-11 72.0 82 51.2
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 3.6e-11 71.6 75 50.7
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 3.6e-11 71.6 77 49.4
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 3.6e-11 71.6 74 51.4
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 4.6e-11 71.2 77 51.9
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 4.6e-11 71.2 82 48.8
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 4.6e-11 71.2 92 47.8
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 6.1e-11 70.9 77 49.4
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 6.1e-11 70.9 71 50.7
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 6.1e-11 70.9 35 85.7
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 7.9e-11 70.5 88 47.7
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 7.9e-11 70.5 80 51.2
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.0e-10 70.1 81 46.9
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 1.0e-10 70.1 82 42.7
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.0e-10 70.1 85 44.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 1.0e-10 70.1 77 48.1
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.4e-10 69.7 81 48.1
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 2.3e-10 68.9 40 72.5
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 3.0e-10 68.6 40 70.0
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 3.0e-10 68.6 46 65.2
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 3.0e-10 68.6 73 49.3
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 3.0e-10 68.6 80 48.8
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 6.7e-10 67.4 66 50.0
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 6.7e-10 67.4 86 44.2
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 6.7e-10 67.4 74 48.6
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 6.7e-10 67.4 70 48.6
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.7e-10 67.4 70 48.6
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 6.7e-10 67.4 76 48.7
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 6.7e-10 67.4 82 46.3
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 8.8e-10 67.0 86 44.2
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.1e-09 66.6 76 51.3
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.1e-09 66.6 75 49.3
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 1.1e-09 66.6 69 49.3
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.1e-09 66.6 63 52.4
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.0e-09 65.9 82 46.3
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 2.0e-09 65.9 78 46.2
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 2.5e-09 65.5 30 90.0
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 2.5e-09 65.5 74 50.0
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 2.5e-09 65.5 76 50.0
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 5.7e-09 64.3 71 49.3
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 5.7e-09 64.3 72 48.6
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 5.7e-09 64.3 40 67.5
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 7.4e-09 63.9 69 42.0
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 7.4e-09 63.9 69 42.0
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 7.4e-09 63.9 79 48.1
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 9.7e-09 63.5 72 48.6
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 1.3e-08 63.2 62 50.0
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.7e-08 62.8 62 50.0
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 2.2e-08 62.4 40 67.5
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.8e-08 62.0 72 51.4
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.8e-08 62.0 75 44.0
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.7e-08 61.6 75 50.7
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 4.8e-08 61.2 45 57.8
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 4.8e-08 61.2 40 62.5
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 6.3e-08 60.8 75 52.0
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 8.2e-08 60.5 75 50.7
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.4e-07 59.7 40 65.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.4e-07 59.7 73 42.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 3.1e-07 58.5 76 47.4
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 5.3e-07 57.8 64 48.4
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 9.1e-07 57.0 38 63.2
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 9.1e-07 57.0 40 62.5


User provided reference genes

Program Settings