Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007456 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D013044 3.7e-32 141.0 73 100.0
CSS0018916 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D013044 1.1e-31 139.4 73 98.6
CSS0004317 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 3.8e-29 131.0 70 97.1
CSS0014470 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 3.8e-29 131.0 70 97.1
CSS0013967 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 2.5e-28 128.3 70 95.7
CSS0027124 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 2.5e-28 128.3 70 95.7
TWI34G1864 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 3.2e-28 127.9 70 94.3
Lj4g0021489 Lotus japonicus HOM05D002928 ORTHO05D003794 5.5e-28 127.1 70 94.3
MD02G1006600 Malus domestica HOM05D002928 ORTHO05D003794 5.5e-28 127.1 70 94.3
Prupe.7G264100 Prunus persica HOM05D002928 ORTHO05D003794 5.5e-28 127.1 70 94.3
EL10Ac6g15341 Beta vulgaris HOM05D002928 ORTHO05D003794 7.2e-28 126.7 70 94.3
Hma1.2p1_0222F.1_g093640 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 7.2e-28 126.7 70 94.3
Rhsim01G0028300 Rhododendron simsii HOM05D002928 ORTHO05D003794 7.2e-28 126.7 70 92.9
Hund04383 Selenicereus undatus HOM05D002928 ORTHO05D003794 7.2e-28 126.7 70 94.3
Cpa.g.sc46.162 Carica papaya HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
CiPaw.15G167900 Carya illinoinensis HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
FvH4_1g00830 Fragaria vesca HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
FAN23G2032 Fragaria x ananassa HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
FAN24G1218 Fragaria x ananassa HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
FAN26G1266 Fragaria x ananassa HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
FAN28G2936 Fragaria x ananassa HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
Manes.06G034500 Manihot esculenta HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 92.9
Oeu054272.1 Olea europaea HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 94.3
TWI32G1175 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 9.4e-28 126.3 70 92.9
Ah.03g147670 Amaranthus hybridus HOM05D002928 ORTHO05D003794 1.2e-27 125.9 70 94.3
Sabra18G0090300 Salix brachista HOM05D002928 ORTHO05D003794 1.2e-27 125.9 70 92.9
Glyma.06G220500 Glycine max HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
Glyma.17G073300 Glycine max HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
Lj6g0013054 Lotus japonicus HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
Phvul.009G194700 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
Rhsim03G0257400 Rhododendron simsii HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
Sed0017586 Sechium edule HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
VMungo1309G0506 Vigna mungo HOM05D002928 ORTHO05D003794 1.6e-27 125.6 70 92.9
MSTRG.19654 Avicennia marina HOM05D002928 ORTHO05D003794 2.1e-27 125.2 70 92.9
Ciclev10007753m.g Citrus clementina HOM05D002928 ORTHO05D003794 2.1e-27 125.2 70 91.4
Cc06_g14860 Coffea canephora HOM05D002928 ORTHO05D003794 2.1e-27 125.2 70 92.9
FvH4_2g11040 Fragaria vesca HOM05D002928 ORTHO05D003794 2.1e-27 125.2 70 92.9
Lalb_Chr11g0072651 Lupinus albus HOM05D002928 ORTHO05D003794 2.1e-27 125.2 70 92.9
arahy.Tifrunner.gnm1.ann1.AAXI8T Arachis hypogaea HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
arahy.Tifrunner.gnm1.ann1.V0HTQD Arachis hypogaea HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
CAN.G160.55 Capsicum annuum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
CAN.G551.45 Capsicum annuum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Gohir.A07G027100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Gohir.D07G031100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Gorai.001G032400 Gossypium raimondii HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Lalb_Chr13g0300841 Lupinus albus HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
MD15G1151700 Malus domestica HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Manes.14G144400 Manihot esculenta HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Nitab4.5_0001571g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Nitab4.5_0005653g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Nitab4.5_0008875g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Phvul.003G155500 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 91.4
RcHm_v2.0_Chr2g0085561 Rosa chinensis HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Solyc12g009990.2 Solanum lycopersicum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Sopen12g004860 Solanum pennellii HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
PGSC0003DMG400007905 Solanum tuberosum HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
SGA_v2.0_scaffold45G17027 Striga asiatica HOM05D002928 ORTHO05D003794 2.7e-27 124.8 70 92.9
Ca_21132_v3 Cicer arietinum L. HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
COL.COLO4_18815 Corchorus olitorius HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Duzib168G1829 Durio zibethinus HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Gohir.A06G098000 Gossypium hirsutum HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Gorai.010G113600 Gossypium raimondii HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Lj1C1019G10 Lonicera japonica HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Medtr4g130770 Medicago truncatula HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
Potri.006G183600 Populus trichocarpa HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 91.4
Sabra06G0139500 Salix brachista HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 91.4
TPR.G30712 Trifolium pratense HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 92.9
vmacro05439 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 91.4
vmacro16797 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 3.6e-27 124.4 70 91.4
Actinidia38670 Actinidia chinensis HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
HanXRQChr06g0180611 Helianthus annuus HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
Lsat_1_v5_gn_8_63581 Lactuca sativa HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 92.9
Lj1C1016G8 Lonicera japonica HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
Potri.018G105900 Populus trichocarpa HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
THA.LOC104819994 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 90.0
Thecc.09G029000 Theobroma cacao HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
VMungo1215G3047 Vigna mungo HOM05D002928 ORTHO05D003794 4.7e-27 124.0 70 91.4
CARHR238470 Cardamine hirsuta HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
ClCG02G014440 Citrullus lanatus HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
Haze_19196 Corylus avellana HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 92.9
MELO3C004130.2 Cucumis melo HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
CsaV3_2G007560 Cucumis sativus L. HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
Psat0s2403g0040 Pisum sativum HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
SalBow1G3419 Salvia bowleyana HOM05D002928 ORTHO05D003794 6.1e-27 123.6 70 91.4
COL.COLO4_22866 Corchorus olitorius HOM05D002928 ORTHO05D003794 8.0e-27 123.2 70 91.4
ECA248G1996 Erigeron canadensis HOM05D002928 ORTHO05D003794 8.0e-27 123.2 70 91.4
HanXRQChr05g0143981 Helianthus annuus HOM05D002928 ORTHO05D003794 8.0e-27 123.2 70 90.0
HPP92_005048 Vanilla planifolia HOM05D002928 ORTHO05D003794 8.0e-27 123.2 70 91.4
HPP92_005065 Vanilla planifolia HOM05D002928 ORTHO05D003794 8.0e-27 123.2 70 91.4
Actinidia24380 Actinidia chinensis HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 90.0
ATR0115G002 Amborella trichopoda HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
AL7G21540 Arabidopsis lyrata HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 90.0
AT4G30600 Arabidopsis thaliana HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 90.0
Carub.0007s0997 Capsella rubella HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 90.0
AUR62003540 Chenopodium quinoa HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
Dinv41370 Davidia involucrata HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
Dinv42848 Davidia involucrata HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 92.9
Dinv43252 Davidia involucrata HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 92.9
Migut.J01351 Erythranthe guttata HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
Gohir.D06G098500 Gossypium hirsutum HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
MBI16_g24666_MAGBIO Magnolia biondii HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 92.9
Nn8g39922 Nelumbo nucifera HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
Peaxi162Scf00062g00219 Petunia axillaris HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
Sed0012591 Sechium edule HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
GSVIVG01023620001 Vitis vinifera HOM05D002928 ORTHO05D003794 1.0e-26 122.9 70 91.4
THA.LOC104803542 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 1.4e-26 122.5 70 88.6
CANSAT11G1221 Cannabis sativa HOM05D002928 ORTHO05D003794 1.8e-26 122.1 70 91.4
Eucgr.C02497 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.8e-26 122.1 68 91.2
Eucgr.C02536 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.8e-26 122.1 68 91.2
Duzib187G0297 Durio zibethinus HOM05D002928 ORTHO05D003794 2.3e-26 121.7 70 90.0
QL02p093370 Quercus lobata HOM05D002928 ORTHO05D003794 2.3e-26 121.7 69 91.3
TAR383G0178 Trochodendron aralioides HOM05D002928 ORTHO05D003794 2.3e-26 121.7 70 91.4
TAR625G0332 Trochodendron aralioides HOM05D002928 ORTHO05D003794 2.3e-26 121.7 70 91.4
Cfa020818 Carpinus fangiana HOM05D002928 ORTHO05D003794 3.0e-26 121.3 70 91.4
Nn2g12407 Nelumbo nucifera HOM05D002928 ORTHO05D003794 3.0e-26 121.3 70 91.4
Oeu052208.1 Olea europaea HOM05D002928 ORTHO05D003794 3.0e-26 121.3 67 92.5
SGA_v2.0_scaffold265G46103 Striga asiatica HOM05D002928 ORTHO05D003794 3.0e-26 121.3 70 88.6
Aa31LG2G19920 Aethionema arabicum HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 88.6
BcaNung04564 Brassica carinata HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 90.0
A03p60120 Brassica napus HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 90.0
BraA03t15057Z Brassica rapa HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 90.0
CDE03G0364 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 90.0
CDE06G1463 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 4.0e-26 120.9 70 90.0
Os08g0480100 Oryza sativa ssp. japonica HOM05D002928 ORTHO05D003794 5.2e-26 120.6 70 91.4
QL02p068861 Quercus lobata HOM05D002928 ORTHO05D003794 5.2e-26 120.6 69 89.9
SEGI_12988 Sequoiadendron giganteum HOM05D002928 ORTHO05D003794 5.2e-26 120.6 68 91.2
Zm00001eb000480 Zea mays HOM05D002928 ORTHO05D003794 5.2e-26 120.6 70 91.4
Zm00001eb146090 Zea mays HOM05D002928 ORTHO05D013044 5.2e-26 120.6 70 91.4
AUR62017854 Chenopodium quinoa HOM05D002928 ORTHO05D003794 6.8e-26 120.2 70 90.0
ATR0772G178 Amborella trichopoda HOM05D002928 ORTHO05D003794 8.8e-26 119.8 70 90.0
AagrBONN_evm.TU.Sc2ySwM_344.2608 Anthoceros agrestis HOM05D002928 ORTHO05D003794 8.8e-26 119.8 68 88.2
Aqoxy3G02300 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 8.8e-26 119.8 68 91.2
PGR102G2877 Punica granatum HOM05D002928 ORTHO05D003794 8.8e-26 119.8 70 88.6
BcaNung00569 Brassica carinata HOM05D002928 ORTHO05D003794 1.5e-25 119.0 70 88.6
C07p58050 Brassica napus HOM05D002928 ORTHO05D003794 1.5e-25 119.0 70 88.6
BolC7t46263H Brassica oleracea HOM05D002928 ORTHO05D003794 1.5e-25 119.0 70 88.6
Aqoxy1G00970 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 2.0e-25 118.6 68 89.7
Thhalv10024667m.g Eutrema salsugineum HOM05D002928 ORTHO05D003794 2.0e-25 118.6 70 88.6
Sp7g28470 Schrenkiella parvula HOM05D002928 ORTHO05D003794 2.0e-25 118.6 70 88.6
BcaC09g51851 Brassica carinata HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
BcaNung02974 Brassica carinata HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
A01p07640 Brassica napus HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
C01p08330 Brassica napus HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
BolC1t00819H Brassica oleracea HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
BraA01t00707Z Brassica rapa HOM05D002928 ORTHO05D003794 3.4e-25 117.9 70 88.6
SGA_v2.0_scaffold23G10013 Striga asiatica HOM05D002928 ORTHO05D003794 4.4e-25 117.5 76 84.2
CBR_g18888 Chara braunii HOM05D002928 ORTHO05D003794 5.7e-25 117.1 70 82.9
unitig_60.g25522 Utricularia gibba HOM05D002928 ORTHO05D003794 1.3e-24 115.9 70 85.7
Actinidia23555 Actinidia chinensis HOM05D002928 ORTHO05D002632 1.7e-24 115.5 68 88.2
SGA_v2.0_scaffold426G51505 Striga asiatica HOM05D002928 ORTHO05D003794 1.7e-24 115.5 74 83.8
unitig_0.g516 Utricularia gibba HOM05D002928 ORTHO05D003794 1.7e-24 115.5 70 84.3
Lj1C1017T2 Lonicera japonica HOM05D002928 ORTHO05D003794 2.2e-24 115.2 70 88.6
PSO063G7436 Papaver somniferum HOM05D002928 ORTHO05D003794 2.2e-24 115.2 70 85.7
PSO384G2120 Papaver somniferum HOM05D002928 ORTHO05D003794 2.2e-24 115.2 70 85.7
PSO591G0067 Papaver somniferum HOM05D002928 ORTHO05D003794 2.8e-24 114.8 70 85.7
PSO339G1052 Papaver somniferum HOM05D002928 ORTHO05D003794 3.7e-24 114.4 70 84.3
Psat5g098400 Pisum sativum HOM05D002928 ORTHO05D013044 6.3e-24 113.6 70 85.7
Psat5g133560 Pisum sativum HOM05D002928 ORTHO05D013044 8.3e-24 113.2 70 85.7
CiPaw.16G108700 Carya illinoinensis HOM05D002928 ORTHO05D003794 1.1e-23 112.8 70 85.7
Mapoly0062s0007 Marchantia polymorpha HOM05D002928 ORTHO05D003794 1.1e-23 112.8 69 82.6
Psat5g135320 Pisum sativum HOM05D002928 ORTHO05D013044 9.1e-23 109.8 70 84.3
SMO367G0463 Selaginella moellendorffii HOM05D002928 ORTHO05D003794 4.5e-22 107.5 69 78.3
Pp3c22_18840 Physcomitrium patens HOM05D002928 ORTHO05D003794 1.3e-21 105.9 70 78.6
Pp3c19_22330 Physcomitrium patens HOM05D002928 ORTHO05D003794 1.7e-21 105.5 69 79.7
HanXRQChr10g0296871 Helianthus annuus HOM05D002928 ORTHO05D013044 1.9e-20 102.1 61 83.6
HanXRQChr11g0351901 Helianthus annuus HOM05D002928 ORTHO05D013044 1.9e-20 102.1 61 83.6
vmacro18649 Vaccinium macrocarpon HOM05D002928 ORTHO05D013044 4.2e-20 100.9 72 77.8
MCO13G152 Micromonas commoda HOM05D002928 ORTHO05D003794 9.5e-20 99.8 69 72.5
Psat5g098440 Pisum sativum HOM05D002928 ORTHO05D013044 2.8e-19 98.2 99 60.6
Rhsim01G0028400 Rhododendron simsii HOM05D002928 ORTHO05D011390 2.8e-19 98.2 55 87.3
Cre16.g683950 Chlamydomonas reinhardtii HOM05D002928 ORTHO05D003794 3.6e-19 97.8 58 82.8
CiPaw.16G110000 Carya illinoinensis HOM05D002928 ORTHO05D003794 1.4e-18 95.9 68 72.1
PSO210G4055 Papaver somniferum HOM05D002928 ORTHO05D003794 1.4e-18 95.9 70 71.4
PSO210G6788 Papaver somniferum HOM05D002928 ORTHO05D003794 1.4e-18 95.9 70 71.4
PRCOL_00003397 Prasinoderma coloniale HOM05D002928 ORTHO05D003794 2.3e-18 95.1 70 65.7
RcHm_v2.0_Chr7g0224871 Rosa chinensis HOM05D002928 ORTHO05D003794 1.0e-13 79.7 68 69.1
Haze_26908 Corylus avellana HOM05D002928 ORTHO05D003794 1.7e-13 79.0 57 61.4
TPR.G24848 Trifolium pratense HOM05D002928 ORTHO05D003794 2.9e-13 78.2 42 95.2
Nitab4.5_0002891g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.1e-11 72.0 70 62.9
CiPaw.16G110200 Carya illinoinensis HOM05D002928 ORTHO05D003794 5.8e-09 63.9 52 69.2
vmacro04674 Vaccinium macrocarpon HOM05D002928 ORTHO05D013044 1.2e-06 56.2 69 53.6
Cfa027271 Carpinus fangiana HOM05D002928 ORTHO05D003794 7.8e-06 53.5 59 40.7


User provided reference genes

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