Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.9e-180 636.0 370 100.0
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.4e-132 476.9 354 85.6
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 3.1e-82 309.7 354 63.0
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.1e-63 246.1 356 49.2
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 1.1e-60 238.0 368 44.3
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 2.5e-60 236.9 366 45.4
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 9.6e-60 235.0 364 51.9
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 7.3e-52 208.8 342 43.3
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 9.3e-47 191.8 356 40.7
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 2.6e-41 173.7 354 39.5
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 4.5e-41 172.9 365 37.8
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 9.9e-41 171.8 351 38.7
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 2.1e-38 164.1 355 38.3
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 2.1e-38 164.1 353 38.2
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 1.3e-37 161.4 344 37.8
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 3.0e-37 160.2 350 36.6
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 3.0e-37 160.2 361 38.2
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 1.1e-36 158.3 375 38.7
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 1.5e-36 157.9 355 35.2
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 7.4e-36 155.6 363 35.3
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 2.1e-35 154.1 365 38.4
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.4e-34 151.4 370 34.9
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.1e-34 150.2 352 36.4
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 4.0e-34 149.8 365 36.7
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 2.6e-33 147.1 352 35.5
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 4.5e-33 146.4 360 34.2
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 4.5e-33 146.4 347 36.6
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 4.5e-33 146.4 380 33.4
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 7.6e-33 145.6 342 35.1
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 1.7e-32 144.4 351 35.3
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 3.8e-32 143.3 358 34.4
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 4.9e-32 142.9 373 33.5
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 4.9e-32 142.9 345 35.9
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 1.1e-31 141.7 354 34.7
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 1.4e-31 141.4 347 35.4
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.5e-31 139.4 347 35.7
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 2.1e-30 137.5 350 35.1
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 2.7e-30 137.1 348 34.2
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 3.5e-30 136.7 352 34.1
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 3.5e-30 136.7 357 34.2
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 1.3e-29 134.8 364 32.1
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 1.3e-29 134.8 356 34.3
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 1.8e-29 134.4 350 33.4
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.3e-29 134.0 355 34.6
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 3.9e-29 133.3 355 34.9
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 8.7e-29 132.1 374 33.4
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 1.1e-28 131.7 346 33.8
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 1.9e-28 131.0 364 31.6
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 4.3e-28 129.8 393 31.8
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 7.4e-28 129.0 364 40.9
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 9.6e-28 128.6 348 32.5
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 2.1e-27 127.5 361 32.4
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 2.8e-27 127.1 365 32.1
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.8e-26 124.4 342 31.9
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 3.1e-26 123.6 378 32.3
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 4.1e-26 123.2 341 31.7
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 4.1e-26 123.2 383 31.3
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 5.3e-26 122.9 355 31.8
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 9.0e-26 122.1 346 32.7
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 2.6e-25 120.6 379 33.2
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 5.9e-25 119.4 340 32.9
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.2e-24 117.5 360 32.2
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 2.9e-24 117.1 376 32.4
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 1.1e-23 115.2 355 29.3
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 1.1e-23 115.2 355 32.1
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.4e-23 114.8 367 31.6
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 7.2e-23 112.5 344 30.8
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.2e-22 111.7 349 32.1
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.2e-22 111.7 349 32.1
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 4.6e-22 109.8 341 31.4
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 1.3e-21 108.2 360 29.7
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 3.0e-21 107.1 344 31.4
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.5e-20 104.8 285 34.0
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 1.6e-19 101.3 369 27.6
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 3.1e-18 97.1 361 27.1
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 5.9e-17 92.8 364 27.7
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 1.0e-16 92.0 276 33.0
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 2.9e-16 90.5 361 26.6
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 3.8e-16 90.1 61 70.5
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.5e-16 89.4 356 28.9
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 1.8e-13 81.3 343 28.0
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 2.3e-13 80.9 312 29.5
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 5.1e-13 79.7 342 23.4
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 5.1e-13 79.7 359 24.8
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 1.4e-07 61.6 377 24.9
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 3.6e-06 57.0 53 47.2


User provided reference genes

Program Settings