Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.6e-51 204.5 95 100.0
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.5e-45 183.3 89 92.1
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 5.5e-44 180.6 86 91.9
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 5.5e-44 180.6 87 92.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 5.5e-44 180.6 87 92.0
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 5.5e-44 180.6 87 92.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 9.4e-44 179.9 86 91.9
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.2e-43 179.5 87 90.8
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 2.7e-43 178.3 87 90.8
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 2.7e-43 178.3 87 90.8
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.7e-43 178.3 87 90.8
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 3.6e-43 177.9 87 90.8
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 3.6e-43 177.9 86 89.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 4.6e-43 177.6 87 88.5
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 6.1e-43 177.2 86 90.7
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 7.9e-43 176.8 87 89.7
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.8e-42 175.6 87 87.4
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.3e-42 175.3 87 87.4
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.0e-42 174.9 86 88.4
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.9e-42 174.5 87 89.7
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.9e-42 174.5 85 89.4
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.9e-42 174.5 85 89.4
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 3.9e-42 174.5 85 89.4
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 6.7e-42 173.7 87 86.2
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 6.7e-42 173.7 86 89.5
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.5e-41 172.6 86 87.2
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.0e-41 172.2 86 87.2
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 5.7e-41 170.6 87 87.4
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 5.7e-41 170.6 86 87.2
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 5.7e-41 170.6 83 90.4
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 9.7e-41 169.9 87 87.4
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 9.7e-41 169.9 87 87.4
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 9.7e-41 169.9 83 89.2
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.3e-40 169.5 86 87.2
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.3e-40 169.5 86 87.2
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 2.2e-40 168.7 86 84.9
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 2.2e-40 168.7 86 86.0
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 2.2e-40 168.7 83 88.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 2.8e-40 168.3 99 79.8
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.8e-40 167.5 83 88.0
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 4.8e-40 167.5 87 86.2
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 4.8e-40 167.5 81 88.9
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 6.3e-40 167.2 87 87.4
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 6.3e-40 167.2 86 87.2
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 6.3e-40 167.2 87 86.2
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 6.3e-40 167.2 87 86.2
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 8.2e-40 166.8 92 82.6
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.1e-39 166.4 94 80.9
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 1.1e-39 166.4 86 82.6
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.4e-39 166.0 82 87.8
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 1.8e-39 165.6 87 81.6
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.4e-39 165.2 89 84.3
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 4.1e-39 164.5 87 85.1
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 4.1e-39 164.5 82 86.6
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 5.3e-39 164.1 86 84.9
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 6.9e-39 163.7 89 84.3
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 9.1e-39 163.3 84 85.7
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 9.1e-39 163.3 87 82.8
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.5e-38 162.5 86 86.0
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 3.4e-38 161.4 83 84.3
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 5.9e-38 160.6 87 82.8
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 5.9e-38 160.6 84 84.5
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 5.9e-38 160.6 84 84.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 2.9e-37 158.3 87 83.9
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 5.0e-37 157.5 86 82.6
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 6.5e-37 157.1 87 81.6
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 6.5e-37 157.1 87 81.6
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 6.5e-37 157.1 87 81.6
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 8.5e-37 156.8 86 81.4
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 8.5e-37 156.8 86 81.4
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 8.5e-37 156.8 110 69.1
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-36 156.4 76 94.7
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 80.0
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.9e-36 155.6 87 80.5
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.9e-36 155.6 87 80.5
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.9e-36 155.6 86 80.2
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.9e-36 155.6 87 80.5
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.9e-36 155.6 86 80.2
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.9e-36 155.6 86 80.2
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.9e-36 155.6 87 80.5
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 3.2e-36 154.8 83 81.9
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.2e-36 154.5 88 80.7
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 5.5e-36 154.1 89 79.8
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 7.2e-36 153.7 89 76.4
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.1e-35 152.1 94 75.5
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 3.6e-35 151.4 84 77.4
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 3.6e-35 151.4 84 77.4
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 3.6e-35 151.4 84 77.4
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 3.6e-35 151.4 84 77.4
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 4.7e-35 151.0 86 79.1
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.8e-34 149.1 85 76.5
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 3.0e-34 148.3 85 76.5
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 5.2e-34 147.5 76 80.3
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 3.3e-33 144.8 78 79.5
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 3.3e-33 144.8 83 74.7
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 7.4e-33 143.7 94 72.3
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.2e-30 136.3 79 72.2
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 1.6e-30 136.0 86 74.4
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.7e-29 132.5 63 88.9
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.2e-29 132.1 63 90.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 8.5e-29 130.2 63 87.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 1.8e-26 122.5 61 80.3
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.2e-25 119.8 63 81.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.3e-21 106.3 52 82.7
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.0e-21 104.4 50 88.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 4.7e-19 97.8 64 64.1
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.0e-17 92.4 48 91.7
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.3e-16 89.7 48 87.5
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 6.3e-16 87.4 61 62.3
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.3e-13 79.7 58 58.6
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.3e-13 79.0 37 94.6
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.2e-09 66.6 41 75.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 2.8e-08 62.0 40 70.0
CSS0039373 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D110895 7.8e-06 53.9 27 96.3


User provided reference genes

Program Settings