Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.8e-48 194.5 97 100.0
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 4.5e-33 144.4 93 78.5
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 2.3e-29 132.1 96 68.8
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 1.9e-28 129.0 84 76.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 2.8e-27 125.2 92 69.6
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.2e-25 119.8 100 61.0
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.5e-25 119.4 95 63.2
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 2.6e-25 118.6 97 62.9
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 2.6e-25 118.6 99 62.6
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 9.9e-25 116.7 94 60.6
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 1.9e-23 112.5 94 62.8
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 4.2e-23 111.3 96 61.5
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 5.5e-23 110.9 106 59.4
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 7.1e-23 110.5 97 60.8
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.2e-22 109.8 97 59.8
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 1.2e-22 109.8 98 60.2
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 4.6e-22 107.8 91 61.5
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 4.6e-22 107.8 100 57.0
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.0e-22 107.5 99 58.6
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.0e-22 107.5 88 64.8
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.3e-21 106.3 95 57.9
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 1.8e-21 105.9 103 60.2
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 5.1e-21 104.4 75 73.3
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 1.5e-20 102.8 94 56.4
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 2.5e-20 102.1 95 54.7
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 2.5e-20 102.1 103 57.3
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 5.6e-20 100.9 94 54.3
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.3e-19 99.8 89 57.3
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.6e-19 99.4 88 60.2
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 2.8e-19 98.6 91 54.9
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 6.2e-19 97.4 99 55.6
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 1.4e-18 96.3 97 52.6
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 2.4e-18 95.5 91 53.8
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 6.9e-18 94.0 97 53.6
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 6.9e-18 94.0 87 58.6
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.5e-17 92.8 82 58.5
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.4e-17 91.7 75 58.7
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.4e-17 91.7 75 58.7
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 4.5e-17 91.3 97 53.6
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 5.8e-17 90.9 91 50.5
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 3.8e-16 88.2 98 48.0
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 3.8e-16 88.2 88 50.0
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 4.9e-16 87.8 85 54.1
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 4.9e-16 87.8 98 50.0
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 4.9e-16 87.8 98 50.0
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 8.4e-16 87.0 88 51.1
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.2e-15 85.1 98 49.0
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.2e-15 85.1 76 59.2
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 3.2e-15 85.1 80 57.5
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.6e-14 82.8 76 57.9
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 1.6e-14 82.8 84 53.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.6e-14 82.8 87 48.3
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.1e-14 82.4 76 56.6
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 6.0e-14 80.9 82 48.8
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 6.0e-14 80.9 77 51.9
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 7.9e-14 80.5 77 53.2
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.9e-14 80.5 76 55.3
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.0e-13 80.1 87 50.6
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 1.8e-13 79.3 83 50.6
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.8e-13 79.3 91 46.2
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.3e-13 79.0 82 51.2
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 3.0e-13 78.6 78 50.0
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 3.0e-13 78.6 85 48.2
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.9e-12 75.9 87 42.5
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 4.3e-12 74.7 67 56.7
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 4.3e-12 74.7 85 45.9
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.3e-11 73.2 82 50.0
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 3.7e-11 71.6 80 46.2
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 3.7e-11 71.6 80 46.2
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.1e-10 68.6 53 62.3
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 1.7e-08 62.8 78 44.9
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 2.9e-08 62.0 84 41.7
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 3.8e-08 61.6 84 41.7
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 2.5e-07 58.9 84 40.5
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 5.5e-07 57.8 78 41.0
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.2e-06 56.6 78 39.7
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 1.2e-06 56.6 78 42.3
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 1.6e-06 56.2 79 40.5
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 2.1e-06 55.8 79 38.0
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.7e-06 55.5 78 39.7
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 6.1e-06 54.3 78 39.7


User provided reference genes

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