Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 0.0e+00 1900.2 989 100.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 0.0e+00 1656.0 863 99.4
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1181.0 878 74.6
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 0.0e+00 1177.2 891 73.6
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.4e-310 1069.7 965 64.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.0e-306 1055.8 1061 59.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.3e-305 1053.1 894 67.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.1e-299 1031.9 728 76.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.2e-284 982.6 895 63.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.0e-281 973.8 871 63.3
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.1e-280 970.3 871 63.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 8.8e-270 934.1 938 61.9
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 8.3e-268 927.5 886 61.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 7.2e-264 914.4 896 59.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.1e-263 912.9 884 60.3
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 7.3e-256 887.9 897 59.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 9.5e-256 887.5 870 59.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 5.2e-254 881.7 759 65.1
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 3.7e-252 875.5 899 58.2
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.9e-252 875.2 819 61.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.4e-252 874.8 888 57.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.8e-251 873.2 946 55.8
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.0e-250 868.2 937 57.3
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.8e-247 859.4 935 55.9
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.8e-246 856.7 920 57.0
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.4e-245 852.4 902 57.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 6.4e-244 848.2 894 57.7
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.2e-243 845.9 919 57.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 7.8e-242 841.3 809 60.7
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.4e-235 819.7 902 56.3
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.4e-235 819.7 932 54.2
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 9.2e-235 817.8 943 54.2
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 9.2e-235 817.8 952 53.0
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 8.6e-233 811.2 889 55.9
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.6e-231 807.0 913 55.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.6e-231 805.8 916 54.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.8e-230 803.5 890 56.1
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.8e-230 803.5 891 53.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.2e-230 802.0 900 54.4
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.4e-229 799.3 829 56.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 9.9e-229 797.7 879 56.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 8.4e-228 794.7 882 54.9
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.4e-227 793.1 916 53.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 4.1e-227 792.3 982 50.7
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 4.6e-226 788.9 880 55.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.0e-225 787.7 892 55.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 2.3e-225 786.6 925 53.5
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.1e-224 784.3 874 55.8
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 9.6e-224 781.2 903 54.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.2e-223 780.8 912 53.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 3.6e-223 779.2 878 55.6
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 8.1e-223 778.1 856 54.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 8.1e-223 778.1 915 52.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 5.2e-222 775.4 874 55.4
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 6.9e-222 775.0 881 54.4
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-221 772.7 952 51.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 5.8e-221 771.9 891 54.1
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 5.8e-221 771.9 950 51.2
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-220 770.8 951 50.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 4.9e-220 768.8 1000 50.1
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 8.4e-220 768.1 943 52.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.7e-218 763.1 951 51.2
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.7e-218 763.1 952 51.1
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-218 762.7 891 53.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 4.6e-218 762.3 899 52.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.7e-217 760.4 903 53.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.1e-215 753.4 914 52.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.6e-215 752.7 914 51.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.8e-214 750.4 889 53.3
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-213 747.7 889 53.1
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.8e-213 745.3 889 53.1
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.9e-211 740.3 964 49.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.7e-210 736.5 799 55.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.6e-210 735.7 893 52.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.8e-209 733.8 963 49.2
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.1e-207 726.9 788 54.9
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.4e-206 724.2 989 47.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-204 717.6 889 52.1
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.7e-204 717.2 888 51.8
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 4.9e-204 715.7 1034 46.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.3e-203 711.4 1039 47.3
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 2.1e-202 710.3 952 49.4
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.9e-202 708.4 989 47.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.5e-197 694.1 883 48.9
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 4.2e-195 686.0 791 53.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.2e-195 686.0 761 54.8
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.2e-194 684.5 761 54.7
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 5.7e-192 675.6 878 49.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 9.7e-192 674.9 918 48.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 5.5e-187 659.1 911 47.9
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.2e-186 657.9 868 48.5
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.6e-186 656.4 776 52.6
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.6e-186 656.0 803 49.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.2e-183 647.1 834 50.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 8.2e-183 645.2 886 47.5
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-181 641.3 798 49.1
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-180 638.3 823 48.4
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.0e-180 638.3 883 46.5
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.2e-180 637.1 888 47.1
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.2e-180 637.1 887 46.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 9.4e-179 631.7 885 46.2
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.6e-178 629.8 904 47.1
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-177 628.2 772 50.8
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.4e-177 627.9 879 46.8
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.9e-177 626.3 885 46.9
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.5e-176 624.4 916 45.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.7e-176 622.5 883 45.8
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.7e-176 622.5 888 45.9
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.3e-175 619.0 916 45.1
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.8e-174 617.5 881 45.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.8e-174 617.5 881 45.5
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.5e-173 614.4 944 43.9
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.0e-172 611.7 866 46.2
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.8e-172 609.8 878 45.6
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 7.2e-171 605.5 947 43.6
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.0e-170 602.1 877 45.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 4.8e-167 592.8 898 43.3
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.9e-165 585.9 880 45.6
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-164 585.1 891 46.7
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-164 584.7 752 48.9
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.8e-164 583.2 857 46.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 7.2e-163 578.9 872 44.5
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 9.4e-163 578.6 896 46.3
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.8e-161 572.0 936 44.7
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.2e-154 551.6 862 43.2
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 2.0e-144 517.7 889 40.5
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 3.4e-144 516.9 789 42.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.4e-135 486.1 777 44.7
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.0e-132 478.8 956 39.4
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-131 475.3 538 55.6
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-124 452.2 371 69.3
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.9e-110 404.8 914 35.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.9e-105 386.3 947 34.3
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.9e-105 386.3 947 34.3
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.9e-99 368.2 367 56.9
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.3e-99 367.5 772 35.9
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.6e-96 357.8 652 38.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.9e-87 327.8 321 59.2
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.8e-82 310.5 285 58.6
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 3.9e-76 290.8 398 50.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 7.9e-69 266.5 473 41.0
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 3.3e-67 261.2 398 48.7
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 9.7e-67 259.6 948 27.6
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.9e-56 223.8 240 55.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 3.6e-53 214.5 259 45.9
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 7.2e-46 190.3 482 34.4
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-39 169.5 114 76.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.2e-39 168.7 229 48.0
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.6e-37 161.4 226 49.6
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.4e-35 154.8 184 46.7
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.7e-35 154.1 165 55.8
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.5e-30 137.5 92 75.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.2e-27 129.8 156 43.6
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 9.8e-27 126.7 111 58.6
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.7e-26 125.9 205 45.4
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 2.0e-19 102.4 89 58.4
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 7.5e-19 100.5 113 49.6
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.7e-18 98.2 105 54.3
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 8.3e-18 97.1 89 56.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 2.4e-17 95.5 118 42.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.2e-17 95.1 69 73.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-16 91.7 60 83.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-16 91.7 138 54.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 6.0e-16 90.9 69 65.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.3e-15 89.0 84 58.3
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 6.6e-15 87.4 70 64.3
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 6.6e-15 87.4 70 64.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-14 86.3 104 47.1
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-14 85.9 67 67.2
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.9e-14 85.9 98 52.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 9.5e-14 83.6 59 71.2
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.8e-13 82.0 136 42.6
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.0e-11 75.9 92 45.7
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 4.4e-11 74.7 126 38.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 7.5e-11 73.9 78 48.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.9e-10 71.2 101 40.6
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 3.2e-09 68.6 101 51.5
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 4.1e-09 68.2 55 63.6
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.1e-09 68.2 66 48.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.1e-08 65.9 93 52.7
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.0e-07 63.5 60 50.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.3e-07 62.4 62 53.2
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 1.5e-06 59.7 50 64.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.5e-06 59.7 55 45.5


User provided reference genes

Program Settings